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Assembly Name: Hypothalamus v1

UniGene Name: hypoth_v1_unigene42498

Length: 258 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>hypoth_v1_unigene42498
CATTAACATCAAGCACGCAGTCCTGAAGGAGGTGGAAACTGTTGTCTCCCCTCACTGCATATTTGCCAGCAACACGTCCGCTCTGCCCATCAAGGACATCGCCGCAGTCAGCAAGAGGCCAGATAAGGTCATCGGAATGCACTACTTCTCTCCAGTCGACAAGATGCAGCTCCTTGAGATCATAAGCACTGATAAGACGTCGAAGGACACGATTGCCTCTGCGGTGGCAGTCGGCCTGAAACAGGGGAAAAAGTCATC

Ace file of the UniGene hypoth_v1_unigene42498 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
Solea senegalensis v2.0 (global assembly)	solea_v2.0_unigene68974	2/2

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio).	-	-	0.0	87%
Sma3	Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (Trifunctional protein), alpha subunit	-	-	5.515e-10	-
AutoFact	im:7144234; zgc:158138; K07515 enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase [EC:4.2.1.17 1.1.1.211]	-	-	6.0e-35	87%

Source	ECs	Term	Type	e value	Identity
FL-2	enoyl-CoA hydratase	EC:4.2.1.17	-	6.0e-35	87%

Source	KEGGs	Term	Type	e value	Identity
FL-2	Fatty acid elongation in mitochondria	00062		6.0e-35	87%
FL-2	Fatty acid metabolism	00071		6.0e-35	87%
FL-2	Valine, leucine and isoleucine degradation	00280		6.0e-35	87%
FL-2	Geraniol degradation	00281		6.0e-35	87%
FL-2	Lysine degradation	00310		6.0e-35	87%
FL-2	Benzoate degradation	00362		6.0e-35	87%
FL-2	Tryptophan metabolism	00380		6.0e-35	87%
FL-2	beta-Alanine metabolism	00410		6.0e-35	87%
FL-2	alpha-Linolenic acid metabolism	00592		6.0e-35	87%
FL-2	Aminobenzoate degradation	00627		6.0e-35	87%
FL-2	Propanoate metabolism	00640		6.0e-35	87%
FL-2	Butanoate metabolism	00650		6.0e-35	87%
FL-2	Limonene and pinene degradation	00903		6.0e-35	87%
FL-2	Biosynthesis of unsaturated fatty acids	01040		6.0e-35	87%
FL-2	Biosynthesis of plant hormones	01070		6.0e-35	87%
FL-2	Metabolic pathways	01100		6.0e-35	87%
FL-2	Biosynthesis of secondary metabolites	01110		6.0e-35	87%
FL-2	Fatty acid elongation	00062		6.0e-35	87%
FL-2	Microbial metabolism in diverse environments	01120		6.0e-35	87%
FL-2	Fatty acid degradation	00071		6.0e-35	87%
FL-2	Carbon fixation pathways in prokaryotes	00720		6.0e-35	87%
FL-2	Phenylalanine metabolism	00360		6.0e-35	87%
FL-2	Caprolactam degradation	00930		6.0e-35	87%
FL-2	long-chain-3-hydroxyacyl-CoA dehydrogenase	EC:1.1.1.211	-	6.0e-35	87%

Source	KEGGs	Term	e value	Identity
FL-2	Fatty acid elongation in mitochondria	00062	6.0e-35	87%
FL-2	Fatty acid metabolism	00071	6.0e-35	87%
FL-2	Biosynthesis of unsaturated fatty acids	01040	6.0e-35	87%
FL-2	Biosynthesis of plant hormones	01070	6.0e-35	87%
FL-2	Metabolic pathways	01100	6.0e-35	87%
FL-2	Fatty acid elongation	00062	6.0e-35	87%
FL-2	Fatty acid degradation	00071	6.0e-35	87%

Source	Gene names
Sma3	HADHA; hadha;

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrial fatty acid beta-oxidation multienzyme complex	GO:0016507	Cellular Component	2.254e-29	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	3.731e-12	-
Sma3	3-hydroxyacyl-CoA dehydrogenase activity	GO:0003857	Molecular Function	8.368e-28	-
Sma3	enoyl-CoA hydratase activity	GO:0004300	Molecular Function	6.813e-29	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	2.291e-24	-
Sma3	fatty acid beta-oxidation	GO:0006635	Biological Process	4.683e-25	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Crotonase superfamily	IPR001753	-	2.096e-24	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, C-terminal	IPR006108	-	2.66e-28	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, NAD binding	IPR006176	-	7.425e-28	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, conserved site	IPR006180	-	6.974e-29	-
Sma3	6-phosphogluconate dehydrogenase, C-terminal-like	IPR008927	-	3.983e-24	-
Sma3	Fatty acid oxidation complex, alpha subunit, mitochondrial	IPR012803	-	2.254e-29	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	4.359e-25	-
Sma3	NAD(P)-binding domain	IPR016040	-	1.642e-14	-
Sma3	Enoyl-CoA hydratase/isomerase, conserved site	IPR018376	-	1.346e-26	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: actinopterygii.fasta

Fln subject: F1QYX8

Fln msg: Distance to subject end: 226 aas, your sequence is shorter than subject: 85 - 763

Fln protein: INIKHAVLKEVETVVSPHCIFASNTSALPIKDIAAVSKRPDKVIGMHYFSPVDKMQLLEIISTDKTSKDTIASAVAVGLKQGKKS

Protein Length: 86

Fln nts: CATTAACATCAAGCACGCAGTCCTGAAGGAGGTGGAAACTGTTGTCTCCCCTCACTGCATATTTGCCAGCAACACGTCCGCTCTGCCCATCAAGGACATCGCCGCAGTCAGCAAGAGGCCAGATAAGGTCATCGGAATGCACTACTTCTCTCCAGTCGACAAGATGCAGCTCCTTGAGATCATAAGCACTGATAAGACGTCGAAGGACACGATTGCCTCTGCGGTGGCAGTCGGCCTGAAACAGGGGAAAAAGTCATC

Fln Alignment:

hypothalamus_mira_c33063___INIKHAVLKEVETVVSPHCIFASNTSALPIKDIAAVSKRPDKVIGMHYFSPVDKMQLLEIISTDKTSKDTIASAVAVGLKQGK
F1QYX8_________________LSIKHKVLKEVEAVIPPHCIFATNTSALPIKDIAAVSKRPDKVVGMHYFSPVDKMQLLEIITTDKTSKDTTASAVAVGLKQGK

Curation

No curations to show

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