SoleaDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: Hypothalamus v1

UniGene Name: hypoth_v1_unigene186

Length: 415 nt

UniGene Fasta

>hypoth_v1_unigene186
CACAGACGAAGATGAGTGCCAGTGACGCCAATTCGTCCATCTTCCTCACAGACACACCCAAGCAGATCAAAAACAAGATCAACAAACACGCATTTTCTGGAGGAAAAGACACAGTGGAAGAGCACAGGAAGCACGGTGGAAACGCAGATGTCGACGTTTCCTTCATGTACTTGACCTTTTTCCTGGAAGATGATGAGCAGCTGGAGAAGATCAGACAGGACTATACAAGTGGAGCTCTTCTCACAGGAGAACTGAAGAAGATTTTGATTGAAACGCTGCAGCCAATGATTTCCCAGCATCAAGAGAGACGCAAACAAGTCACAGATGAGACAATCAAGCAGTTTATGACTCCAAGACCTTTAAATTTTAACAACTAGCCCATCTGAGATGTCATTATCTCGTTCTCGAGACAAGA

Ace file of the UniGene hypoth_v1_unigene186

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
Solea senegalensis v2.0 (global assembly)	solea_v2.0_unigene66678	15/15

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Tryptophanyl-tRNA synthetase; Danio rerio (Zebrafish) (Brachydanio rerio).	-	-	0.0	82%
Sma3	Tryptophanyl-tRNA synthetase	-	-	9.788e-14	-
AutoFact	Tryptophanyl-tRNA synthetase n=2 Tax=Danio rerio RepID=Q5RL11_DANRE	-	-	0.0	82%

Source	Gene names
Sma3	WARS; wars;

Source	GOs	Term	Type	e value	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	9.168e-12	-
Sma3	tryptophan-tRNA ligase activity	GO:0004830	Molecular Function	1.21e-32	-
Sma3	ATP binding	GO:0005524	Molecular Function	4.103e-08	-
Sma3	tryptophanyl-tRNA aminoacylation	GO:0006436	Biological Process	1.21e-32	-

Source	InterPros	Term	Type	e value	Identity
Sma3	WHEP-TRS	IPR000738	-	2.791e-17	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	5.522e-25	-
Sma3	Aminoacyl-tRNA synthetase, class Ic	IPR002305	-	7.081e-26	-
Sma3	Tryptophan-tRNA ligase	IPR002306	-	1.21e-32	-
Sma3	S15/NS1, RNA-binding	IPR009068	-	5.782e-16	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	1.633e-20	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: actinopterygii.fasta

Fln subject: Q6PBS3

Fln msg: your sequence is shorter than subject: 125 - 463

Fln protein: QTKMSASDANSSIFLTDTPKQIKNKINKHAFSGGKDTVEEHRKHGGNADVDVSFMYLTFFLEDDEQLEKIRQDYTSGALLTGELKKILIETLQPMISQHQERRKQVTDETIKQFMTPRPLNFNN*

Protein Length: 126

Fln nts: CACAGACGAAGATGAGTGCCAGTGACGCCAATTCGTCCATCTTCCTCACAGACACACCCAAGCAGATCAAAAACAAGATCAACAAACACGCATTTTCTGGAGGAAAAGACACAGTGGAAGAGCACAGGAAGCACGGTGGAAACGCAGATGTCGACGTTTCCTTCATGTACTTGACCTTTTTCCTGGAAGATGATGAGCAGCTGGAGAAGATCAGACAGGACTATACAAGTGGAGCTCTTCTCACAGGAGAACTGAAGAAGATTTTGATTGAAACGCTGCAGCCAATGATTTCCCAGCATCAAGAGAGACGCAAACAAGTCACAGATGAGACAATCAAGCAGTTTATGACTCCAAGACCTTTAAATTTTAACAACTAG___CCCATCTGAGATGTCATTATCTCGTTCTCGAGACAAGA

Fln Alignment:

Contig186___QTKMSASDANSSIFLTDTPKQIKNKINKHAFSGGKDTVEEHRKHGGNADVDVSFMYLTFFLEDDEQLEKIRQDYTSGALLTGELKKILIETLQPMISQHQERRKQVTDETIKQFMTPRPLNFN
Q6PBS3_______________QTKMSASDANSTIFLTDTPKQIKNKVNKHAFSGGKDTIEEHRKLGGDPDVDVSFMYLTFFLEDDEQLEKIRQDYSSGAMLTGELKKSLIDTLQPIIAEHQEKRKHVTDDIVQQFMTPRKLHFS

SNPs (tot: 0)

Position	A %	C %	G %	T %	Probability
247	16		83		0.994512
278			80	20	0.995493
293		83	16		0.994512
297		83		16	0.994512
298	16	16			0.988813
392		16		83	0.995451
400		20		80	0.995493

Curation

No curations to show

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