SoleaDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: Osmoregulation v2.0

UniGene Name: cit_v2.0_unigene46905

Length: 389 nt

UniGene Fasta

>cit_v2.0_unigene46905
CAGAGGAGAACATCACAGCTCTACAGAACGAGGTGCAGAGTGGACAGGCCTCTCAGGTCCAGCTGCAGGAGCAGGACGAGCGACTGCGAGCTCAGCTCAAGCAGATGGAGCTGGACAGAGACTCTGAGCTGAGCAGCCTGAAGACGGAGCTGCTCAGTCAGACAGAGCAGTTAGACCGCTGCCAGGCACGGGTCTTGTATCTGGAGGTGGAGGTAGAAACTCTGACAGAACAGCTTCACAGCCCTGCAGTGTGTGAGGACGACCACAACGGGAGTGTGACGGTGGATGATCTGGATCACATTCACAAAGTCAACAGAGAGTTGGAGCAGCAGCTCAACGACAAGAACAGGACCATCAAGCAGCTGCAGCAGAGACTGGACTGAACTGAA

Ace file of the UniGene cit_v2.0_unigene46905

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
Solea senegalensis v2.0 (global assembly)	solea_v2.0_unigene27267	2/2

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Chromosome undetermined SCAF7354, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer).	-	-	0.0	75%
Sma3	Novel protein similar to vertebrate golgi autoantigen, golgin subfamily a, 1 (GOLGA1, zgc:63688)	-	-	3.255e-06	-
AutoFact	golga1, MGC63688, drgolgin97, zgc:63688; golgin A1	-	-	3.0e-14	37%

Source	Gene names
Sma3	GSTENG00004227001; drgolgin97; zgc:63688;

Source	GOs	Term	Type	e value	Identity
Sma3	protein targeting to Golgi	GO:0000042	Biological Process	3.168e-13	-

Source	InterPros	Term	Type	e value	Identity
Sma3	GRIP	IPR000237	-	2.936e-13	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: actinopterygii.fasta

Fln subject: Q4TAF7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 164 aas, your sequence is shorter than subject: 127 - 894

Fln protein: EENITALQNEVQSGQASQVQLQEQDERLRAQLKQMELDRDSELSSLKTELLSQTEQLDRCQARVLYLEVEVETLTEQLHSPAVCEDDHNGSVTVDDLDHIHKVNRELEQQLNDKNRTIKQLQQRLD*

Protein Length: 128

Fln nts: CAGAGGAGAACATCACAGCTCTACAGAACGAGGTGCAGAGTGGACAGGCCTCTCAGGTCCAGCTGCAGGAGCAGGACGAGCGACTGCGAGCTCAGCTCAAGCAGATGGAGCTGGACAGAGACTCTGAGCTGAGCAGCCTGAAGACGGAGCTGCTCAGTCAGACAGAGCAGTTAGACCGCTGCCAGGCACGGGTCTTGTATCTGGAGGTGGAGGTAGAAACTCTGACAGAACAGCTTCACAGCCCTGCAGTGTGTGAGGACGACCACAACGGGAGTGTGACGGTGGATGATCTGGATCACATTCACAAAGTCAACAGAGAGTTGGAGCAGCAGCTCAACGACAAGAACAGGACCATCAAGCAGCTGCAGCAGAGACTGGACTGAACTGAA

Fln Alignment:

cit_mira_c35770___QASQVQLQEQDERLRAQLKQMELDRDXXXXXXXXXXXXXXXQLDRCQARVLYXXXXXXXXXXQLHSPAVCEDDHNGSVTVDDLDHIHKVNRELEQQLNDKNRTIKQLQQRL
Q4TAF7________________QASLLQLQEEAERQRALQEQTVLEKDSQLDSVKAELLSQTQQLDSCQARVSYLEVEVETLTEQLQSPEVCVDAENGSVTVNDLDHIQKVNRELEQQLGDKNRTIKQLQQRL

Curation

No curations to show

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