SoleaDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: Osmoregulation v2.0

UniGene Name: cit_v2.0_unigene36643

Length: 295 nt

UniGene Fasta

>cit_v2.0_unigene36643
ATGGCTGAAGCCCAGGAAGGACGAGTTTTTGACCGACATCTCTTTGGTCTGTATCTTATTGCCAAAGAGGAGGGATGTCCCACTCCAGAACTCTTCATGGACCCACTTTACACAAAGAGTGGTGGTGGTGGTAACTTTGTGCTGTCGTCCAGTCTGGTTGGATACACCACTGTTCTGGGAGCTGTGGCTCCCATGGTGCACCACGGCTACGGCTTCTTCTACCGCATCAGAGATGACAGGATTGTGATATCCATGTCAGCGTGGAAATCCTGTCATCAGACAGACGCCTGCACAC

Ace file of the UniGene cit_v2.0_unigene36643

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
Solea senegalensis v2.0 (global assembly)	solea_v2.0_unigene71855	3/3

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Carnitine octanoyltransferase; Takifugu rubripes (Japanese pufferfish) (Fugu rubripes).	-	-	0.0	89%
Sma3	Carnitine O-octanoyltransferase	-	-	1.453e-09	-
AutoFact	crot, zgc:110643; carnitine O-octanoyltransferase (EC:2.3.1.137); K05940 carnitine O-octanoyltransferase [EC:2.3.1.137]	-	-	4.0e-38	79%

Source	ECs	Term	Type	e value	Identity
FL-2	Carnitine O-octanoyltransferase.	EC:2.3.1.137	-	4.0e-38	79%

Source	Gene names
Sma3	CROT; CROT (1 of 2); GSTENG00034002001; crot;

Source	GOs	Term	Type	e value	Identity
Sma3	fatty-acyl-CoA binding	GO:0000062	Molecular Function	8.497e-07	-
Sma3	transferase activity, transferring acyl groups	GO:0016746	Molecular Function	1.408e-25	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Acyltransferase ChoActase/COT/CPT	IPR000542	-	2.503e-28	-
Sma3	Acyl-CoA-binding protein, ACBP	IPR000582	-	8.497e-07	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: actinopterygii.fasta

Fln subject: Q804Z5

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 98 - 647

Fln protein: MAEAQEGRVFDRHLFGLYLIAKEEGCPTPELFMDPLYTKSGGGGNFVLSSSLVGYTTVLGAVAPMVHHGYGFFYRIRDDRIVISMSAWKSCHQTDACT

Protein Length: 99

Fln nts: ATGGCTGAAGCCCAGGAAGGACGAGTTTTTGACCGACATCTCTTTGGTCTGTATCTTATTGCCAAAGAGGAGGGATGTCCCACTCCAGAACTCTTCATGGACCCACTTTACACAAAGAGTGGTGGTGGTGGTAACTTTGTGCTGTCGTCCAGTCTGGTTGGATACACCACTGTTCTGGGAGCTGTGGCTCCCATGGTGCACCACGGCTACGGCTTCTTCTACCGCATCAGAGATGACAGGATTGTGATATCCATGTCAGCGTGGAAATCCTGTCATCAGACAGACGCCTGCACAC

Fln Alignment:

cit_mira_c21771___MAEAQEGRVFDRHLFGLYLIAKEEGCPTPELFMDPLYTKSGGGGNFVLSSSLVGYTTVLGAVAPMVHHGYGFFYRIRDDRIVISMSAWKSCHQTDA
Q804Z5________________MAEAQEGRGFDRHLLGLYLIAKEEGRPVPELFLDPLYAKSGGGGNFVLSSSLVGYTTVLGAVAPMVPHGYGFFYRIREDRIVISISAWKSCRQTDA

SSRs (tot: 1)

Start position	End position	Sequence	Length
119	132	GTG GTG GTG GTG GT	14

Curation

No curations to show

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