SoleaDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: Osmoregulation v2.0

UniGene Name: cit_v2.0_unigene30

Length: 399 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>cit_v2.0_unigene30
GCGCAGCCTGCTGGAGTGGAGACGGAGGGTCAAGTCTGAATACATGCGCCTTCGCCAACTGAAACGCCTTAAAAAAGCCGAGGAGGTCAAGACTCTGTTCATGTCCAACCGACAGAAGATCGAGCAGCAGACAAATCTTCTGAACGCAGAGTGGGCCAAGCTCAGGATTCAGTCCACGCCTTTGTCAACTTCTGCTGGAGCGATGGCCAATAAGAAGATGTGCACAGTGGAGTTTGGTTTCCCAGGATTCAAAGCCCAGGCCATCGCCATGAGGCCACTCTCGACCGTGACTGGAATCCCCTTCATGTACTCCTGGTCGCCTCTGCAGCACAACTTCATGGTGGAGGATGAGACATTCCTTCACAACATCCCTTACATGGGCGACGAGGTGCTGGAGCA

Ace file of the UniGene cit_v2.0_unigene30 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
Solea senegalensis v2.0 (global assembly)	solea_v2.0_unigene80555	13/13

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Enhancer of zeste homolog 1 (Drosophila); Oryzias latipes (Medaka fish) (Japanese ricefish).	-	-	0.0	87%
Sma3	Enhancer of zeste homolog 2	-	-	7.984e-14	-
AutoFact	ezh1, MGC136829, zgc:136829; enhancer of zeste homolog 1 (Drosophila)	-	-	0.0	77%

Source	ECs	Term	Type	e value	Identity
Sma3	histone-lysine N-methyltransferase	EC:2.1.1.43	-	4.926e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine degradation	00310		4.926e-07	%

Source	Gene names
Sma3	EZH1; ezh1; ezh2;

Source	GOs	Term	Type	e value	Identity
Sma3	ESC/E(Z) complex	GO:0035098	Cellular Component	2.042e-07	-
Sma3	DNA binding	GO:0003677	Molecular Function	4.075e-16	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SANT/Myb domain	IPR001005	-	9.032e-35	-
Sma3	SET domain	IPR001214	-	1.55e-34	-
Sma3	WD repeat binding protein EZH2	IPR021654	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: actinopterygii.fasta

Fln subject: D5MRT8

Fln msg: Distance to subject end: 605 aas, your sequence is shorter than subject: 132 - 766

Fln protein: RSLLEWRRRVKSEYMRLRQLKRLKKAEEVKTLFMSNRQKIEQQTNLLNAEWAKLRIQSTPLSTSAGAMANKKMCTVEFGFPGFKAQAIAMRPLSTVTGIPFMYSWSPLQHNFMVEDETFLHNIPYMGDEVLE

Protein Length: 133

Fln nts: GCGCAGCCTGCTGGAGTGGAGACGGAGGGTCAAGTCTGAATACATGCGCCTTCGCCAACTGAAACGCCTTAAAAAAGCCGAGGAGGTCAAGACTCTGTTCATGTCCAACCGACAGAAGATCGAGCAGCAGACAAATCTTCTGAACGCAGAGTGGGCCAAGCTCAGGATTCAGTCCACGCCTTTGTCAACTTCTGCTGGAGCGATGGCCAATAAGAAGATGTGCACAGTGGAGTTTGGTTTCCCAGGATTCAAAGCCCAGGCCATCGCCATGAGGCCACTCTCGACCGTGACTGGAATCCCCTTCATGTACTCCTGGTCGCCTCTGCAGCACAACTTCATGGTGGAGGATGAGACATTCCTTCACAACATCCCTTACATGGGCGACGAGGTGCTGGAGCA

Fln Alignment:

Contig30___RSLLEWRRRVKSEYMRLRQLKRLKKAEEVKTLFMSNRQKIEQQTNLLNAEWAKLRIQSTPLSTSAGAMANKKMCTVEFGFPGFKAQAIAMRPLSTVTGIPFMYSWSPLQHNFMVEDETFLHNIPYMGDEVLE
D5MRT8_____________RSLLEWRRRVKSEYMRLRQLKRLKKADEVKTLFSSNREKIEQQTTVLNSEWSTLKIQSIPLSVSNVALANKKMCSVEFGFPGFKAQAIAMRPLSTVAGIPFMYSWSPLQHNFMVEDETFLHNIPYMGDEVLE

SNPs (tot: 0)

Position	A %	C %	G %	T %	Probability
151	90		10		0.90298
324		20		80	0.995493

Curation

No curations to show

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