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Assembly Name: Hypothalamus m-f1 v1.0

Name: LDLR class B repeat

Term: IPR000033  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
hpt_m_f1_v1.0_unigene769 Hypothalamus m-f1 v1.0 301
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 5.0e-10
C-terminus
hpt_m_f1_v1.0_unigene1086 Hypothalamus m-f1 v1.0 201
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: PREDICTED: low-density lipoprotein receptor-related protein 1 n=1 Tax=Danio rerio RepID=UPI0002027320 1.0e-19
C-terminus
hpt_m_f1_v1.0_unigene1129 Hypothalamus m-f1 v1.0 337
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 4.0e-31
Internal
hpt_m_f1_v1.0_unigene3737 Hypothalamus m-f1 v1.0 170
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: low-density lipoprotein receptor-related protein 1-like 3.0e-12
Internal
hpt_m_f1_v1.0_unigene4040 Hypothalamus m-f1 v1.0 558
FL-Next: tr=Chromosome 11 SCAF14979, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Si:dkey-184d2.1 4.557e-09
AutoFact: fj39b01; wu:fj39b01; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 0.0
Internal
hpt_m_f1_v1.0_unigene4061 Hypothalamus m-f1 v1.0 442
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Novel protein similar to vertebrate low density lipoprotein-related protein 1B (Deleted in tumors) (LRP1B) 5.392e-09
AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 0.0
Internal
hpt_m_f1_v1.0_unigene8143 Hypothalamus m-f1 v1.0 287
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 4.0e-18
Internal
hpt_m_f1_v1.0_unigene8681 Hypothalamus m-f1 v1.0 422
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: PREDICTED: low-density lipoprotein receptor-related protein 8-like n=1 Tax=Danio rerio RepID=UPI0002026FA6 6.0e-06
N-terminus
hpt_m_f1_v1.0_unigene11546 Hypothalamus m-f1 v1.0 227
FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Low-density lipoprotein receptor-related protein 2 8.628e-10
AutoFact: lrp2, im:680590; low density lipoprotein-related protein 2; K06233 low density lipoprotein-related protein 2 3.0e-31
Internal
hpt_m_f1_v1.0_unigene15030 Hypothalamus m-f1 v1.0 216
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Si:dkey-184d2.1 2.056e-10
AutoFact: Novel protein similar to vertebrate low density lipoprotein-related protein 1B (Deleted in tumors) (LRP1B) (Fragment) n=1 Tax=Danio rerio RepID=Q1L8K6_DANRE 6.0e-11
Internal
hpt_m_f1_v1.0_unigene18132 Hypothalamus m-f1 v1.0 333
FL-Next: tr=Very low-density lipoprotein receptor; Solea senegalensis (Senegalese sole). 0.0
Sma3: Vitellogenin receptor 4.025e-20
AutoFact: Very low-density lipoprotein receptor n=1 Tax=Solea senegalensis RepID=Q2L4C1_SOLSE 7.0e-26
C-terminus

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain