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Assembly Name: Gonads v1

Name: PAS domain

Term: IPR000014  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
gonads_v1_unigene2723 Gonads v1 284
Sma3: Aryl hydrocarbon receptor repressor 2.758e-25
AutoFact: PREDICTED: similar to tubulin, gamma complex associated protein 2 n=1 Tax=Canis lupus familiaris RepID=UPI00005A5001 0.0
unknown
gonads_v1_unigene6501 Gonads v1 390
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Nuclear receptor coactivator 3 4.39e-09
AutoFact: pppde2a, MGC73066, fam152ba, zgc:73066; PPPDE peptidase domain containing 2a 3.0e-27
Internal
gonads_v1_unigene7298 Gonads v1 175
FL-Next: tr=Chromosome 16 SCAF14974, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Period 1 1.01e-21
AutoFact: Unassigned protein
Internal
gonads_v1_unigene10690 Gonads v1 512
FL-Next: tr=Brain and muscle ARNT-like 1 protein; Haplochromis burtoni (Burton's mouthbrooder). 0.0
Sma3: Aryl hydrocarbon receptor nuclear translocator 1.232e-21
Internal
gonads_v1_unigene13202 Gonads v1 965
FL-Next: tr=Hypoxia-inducible factor 4 alpha; Epinephelus coioides (Orange-spotted grouper) (Epinephelus nebulosus). 0.0
C-terminus
gonads_v1_unigene14024 Gonads v1 683
FL-Next: tr=Clock-3a protein; Haplochromis burtoni (Burton's mouthbrooder). 0.0
Sma3: Clock 3.487e-10
AutoFact: FLJ10900, im:6898509, tyw1, wu:fb74d01; zgc:153368 0.0
N-terminus
gonads_v1_unigene21448 Gonads v1 301
Sma3: Mediator complex subunit 15 8.972e-11
unknown
gonads_v1_unigene22098 Gonads v1 292
Sma3: Circadian locomoter output cycles protein kaput 1.211e-08
unknown
gonads_v1_unigene22405 Gonads v1 677
FL-Next: tr=Chromosome 16 SCAF14252, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Hypoxia-inducible factor 1 alpha 0.0
AutoFact: Unassigned protein
Internal
gonads_v1_unigene22919 Gonads v1 262
FL-Next: tr=Aryl hydrocarbon receptor nuclear translocator 2; Micropogonias undulatus (Atlantic croaker). 0.0
Sma3: Aryl hydrocarbon receptor nuclear translocator 1.592e-19
Internal
gonads_v1_unigene23568 Gonads v1 365
FL-Next: tr=Hypoxia-inducible factor 2 alpha; Micropogonias undulatus (Atlantic croaker). 0.0
Sma3: Hypoxia-inducible factor 2 alpha 1.349e-09
Internal
gonads_v1_unigene24522 Gonads v1 258
FL-Next: tr=Nuclear receptor coactivator 2; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
Sma3: Nuclear receptor coactivator 2 1.642e-09
C-terminus
gonads_v1_unigene24952 Gonads v1 558
FL-Next: tr=Nuclear receptor coactivator 2; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
Sma3: Nuclear receptor coactivator 2 3.937e-20
AutoFact: PREDICTED: cytoplasmic dynein 2 heavy chain 1-like n=1 Tax=Anolis carolinensis RepID=UPI000203D61B 0.0
Putative N-terminus
gonads_v1_unigene29306 Gonads v1 458
FL-Next: tr=Aryl hydrocarbon receptor nuclear translocator 1; Micropogonias undulatus (Atlantic croaker). 0.0
Sma3: Aryl hydrocarbon receptor nuclear translocator 4.118e-23
AutoFact: arnt, MGC136664, zgc:136664; aryl hydrocarbon receptor nuclear translocator; K09097 hypoxia-inducible factor 1 beta 0.0
Internal
gonads_v1_unigene32832 Gonads v1 171
FL-Next: tr=Novel protein similar to vertebrate PAS domain containing serine/threonine kinase (PASK); Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: PAS domain-containing serine/threonine-protein kinase-like 2.0e-20
Internal
gonads_v1_unigene37795 Gonads v1 370
FL-Next: tr=Aryl hydrocarbon receptor nuclear translocator; Microgadus tomcod (Atlantic tomcod). 0.0
Sma3: Aryl hydrocarbon receptor nuclear translocator 5.05e-12
AutoFact: Aryl hydrocarbon receptor nuclear translocator n=2 Tax=Microgadus tomcod RepID=D3U1A8_MICTO 3.0e-31
Internal
gonads_v1_unigene45600 Gonads v1 274
FL-Next: tr=Ncoa3 protein; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
Sma3: Nuclear receptor coactivator 2 4.14e-20
AutoFact: nuclear receptor coactivator 2-like 3.0e-40
Internal
gonads_v1_unigene47521 Gonads v1 203
AutoFact: Unassigned protein
Coding
gonads_v1_unigene48586 Gonads v1 176
FL-Next: tr=Aryl hydrocarbon receptor 1; Pagrus major (Red sea bream) (Chrysophrys major). 0.0
Sma3: Aryl hydrocarbon receptor 1b 1.959e-09
AutoFact: Aryl hydrocarbon receptor 1 n=2 Tax=Sparidae RepID=Q4LER3_PAGMA 2.0e-22
Internal
gonads_v1_unigene49490 Gonads v1 491
FL-Next: tr=Potassium voltage-gated channel subfamily H member 1; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Potassium voltage-gated channel, subfamily H (eag-related), member 1 1.959e-09
AutoFact: PREDICTED: LOW QUALITY PROTEIN: potassium voltage-gated channel subfamily H member 1-like, partial n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI0001DE763B 3.00004e-41
Putative C-terminus

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain