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Assembly Name: Gonads v1

Name: LDLR class B repeat

Term: IPR000033  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
gonads_v1_unigene1270 Gonads v1 1585
FL-Next: tr=Novel protein containing multiple low-density lipoprotein receptors domain class A, low-density lipoprotein receptor repeat class B and EGF-like domains; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: Enhancer of zeste homolog 1 (Drosophila) n=1 Tax=Oryzias latipes RepID=D5MRT8_ORYLA 0.0
Putative C-terminus
gonads_v1_unigene1856 Gonads v1 621
FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: Basic helix-loop-helix domain-containing protein KIAA2018 n=1 Tax=Dicentrarchus labrax RepID=E6ZIS9_DICLA 0.0
C-terminus
gonads_v1_unigene2552 Gonads v1 509
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Si:ch211-181p13.1 4.128e-09
AutoFact: PLD5; phospholipase D family, member 5 7.0e-26
Internal
gonads_v1_unigene7951 Gonads v1 169
FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: Ras-related protein Rab-10 n=25 Tax=Euteleostomi RepID=RAB10_HUMAN 0.0
Internal
gonads_v1_unigene9515 Gonads v1 297
FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Internal
gonads_v1_unigene10433 Gonads v1 577
FL-Next: tr=Novel protein containing multiple low-density lipoprotein receptors domain class A, low-density lipoprotein receptor repeat class B and EGF-like domains; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Internal
gonads_v1_unigene10472 Gonads v1 465
FL-Next: tr=Nidogen-1; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Nidogen 2b (osteonidogen) 7.02e-09
AutoFact: rer1, MGC65968, zgc:65968; RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) 0.0
Internal
gonads_v1_unigene12937 Gonads v1 437
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: fkbp14, fd36a03, wu:fd36a03, zgc:91851; FK506 binding protein 14 (EC:5.2.1.8); K09577 FK506-binding protein 14 [EC:5.2.1.8] 0.0
C-terminus
gonads_v1_unigene13788 Gonads v1 870
FL-Next: tr=Chromosome 11 SCAF14979, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Si:dkey-184d2.1 4.536e-09
AutoFact: zinc finger protein 160-like 1.4013e-45
Internal
gonads_v1_unigene17471 Gonads v1 331
FL-Next: tr=Very low-density lipoprotein receptor; Solea senegalensis (Senegalese sole). 0.0
Sma3: Vitellogenin receptor 1.87e-24
Putative C-terminus
gonads_v1_unigene23163 Gonads v1 545
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Si:dkey-184d2.1 5.229e-09
AutoFact: Forkhead protein FoxO5 n=1 Tax=Xiphophorus maculatus RepID=Q90YK2_XIPMA 2.0e-34
Internal
gonads_v1_unigene24537 Gonads v1 709
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Si:dkey-184d2.1 2.624e-10
C-terminus
gonads_v1_unigene25757 Gonads v1 285
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: Mannose-6-phosphate isomerase (Fragment) n=2 Tax=Tetraodon nigroviridis RepID=Q4SE73_TETNG 0.0
Internal
gonads_v1_unigene26140 Gonads v1 395
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Vitellogenin receptor 2.195e-06
Internal
gonads_v1_unigene27519 Gonads v1 206
FL-Next: tr=Chromosome 1 SCAF14603, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Internal
gonads_v1_unigene27742 Gonads v1 234
FL-Next: tr=Very low-density lipoprotein receptor; Solea senegalensis (Senegalese sole). 0.0
Sma3: Vitellogenin receptor 1.991e-08
AutoFact: Zgc:152683 n=3 Tax=Danio rerio RepID=A0JMB1_DANRE 3.0e-20
N-terminus
gonads_v1_unigene30971 Gonads v1 329
FL-Next: tr=Low density lipoprotein receptor; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Vitellogenin receptor 2.486e-15
AutoFact: Low density lipoprotein receptor n=1 Tax=Danio rerio RepID=Q7ZZT0_DANRE 6.0e-40
Internal
gonads_v1_unigene31368 Gonads v1 356
FL-Next: tr=Chromosome 1 SCAF14603, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: im:7153933; si:dkey-258f14.3 5.0e-29
Internal
gonads_v1_unigene34624 Gonads v1 298
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Si:ch211-181p13.1 2.753e-09
AutoFact: low-density lipoprotein receptor-related protein 1-like 4.0e-38
Internal
gonads_v1_unigene35084 Gonads v1 351
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: fi30e01, wu:fi30e01; si:dkey-88l16.3 1.0e-35
Internal

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain