Logo_sudoe_cb Cabecera_solea2 Img_right
HomeAssembliesBLASTSearchInstitutions

Assembly Name: Hypothalamus v1

Name: Retinoid X receptor/HNF4

Term: IPR000003  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
hypoth_v1_unigene1845 Hypothalamus v1 472
FL-Next: sp=Nuclear receptor subfamily 2 group F member 1-A; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Retinoid X receptor gamma 3.832e-11
AutoFact: PREDICTED: nuclear receptor subfamily 2, group F, member 2 n=4 Tax=Euteleostomi RepID=UPI000194DFCC 0.0
C-terminus
hypoth_v1_unigene23505 Hypothalamus v1 269
FL-Next: sp=Retinoic acid receptor RXR-gamma-A; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Retinoid X receptor 0.0
AutoFact: rxrga, NR2B1, RXR, rxra, rxrg; retinoid x receptor, gamma a; K08524 retinoid X receptor alpha 3.00018e-42
Internal
hypoth_v1_unigene25038 Hypothalamus v1 223
FL-Next: tr=Retinoid X receptor gamma; Sebastiscus marmoratus (false kelpfish). 0.0
AutoFact: Retinoid X receptor gamma n=1 Tax=Sebastiscus marmoratus RepID=B5TEI1_9PERC 9.0e-16
Internal
hypoth_v1_unigene35774 Hypothalamus v1 244
FL-Next: tr=Retinoid X receptor gamma; Sebastiscus marmoratus (false kelpfish). 0.0
Sma3: Retinoid X receptor 1.211e-26
AutoFact: RXR gamma (Fragment) n=1 Tax=Scophthalmus maximus RepID=Q71LW7_PSEMX 6.0e-14
Internal
hypoth_v1_unigene48742 Hypothalamus v1 235
FL-Next: tr=Retinoid X receptor gamma; Sebastiscus marmoratus (false kelpfish). 0.0
Sma3: Retinoid X receptor 1.52e-11
AutoFact: Retinoid X receptor gamma n=1 Tax=Sebastiscus marmoratus RepID=B5TEI1_9PERC 7.0e-37
Putative C-terminus

Go to Annotations List

Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain