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Assembly Name: Hypothalamus v1

Name: PAS domain

Term: IPR000014  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
hypoth_v1_unigene8285 Hypothalamus v1 388
FL-Next: tr=Aryl hydrocarbon receptor repressor; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
Sma3: Aryl hydrocarbon receptor repressor 2.827e-18
AutoFact: Aryl hydrocarbon receptor repressor n=1 Tax=Dicentrarchus labrax RepID=E6ZI91_DICLA 0.0
Putative C-terminus
hypoth_v1_unigene9691 Hypothalamus v1 383
FL-Next: tr=Potassium voltage-gated channel subfamily H member 1; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: PREDICTED: LOW QUALITY PROTEIN: potassium voltage-gated channel subfamily H member 1-like, partial n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI0001DE763B 3.0e-13
C-terminus
hypoth_v1_unigene14596 Hypothalamus v1 332
FL-Next: tr=Chromosome 3 SCAF14756, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: potassium voltage-gated channel, subfamily H, member 7-like; K04910 potassium voltage-gated channel Eag-related subfamily H member 7 3.0e-13
Internal
hypoth_v1_unigene18578 Hypothalamus v1 177
FL-Next: tr=Zgc:158458; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: zgc:158458 (EC:3.1.4.17); K01120 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17] 3.0e-22
Internal
hypoth_v1_unigene29301 Hypothalamus v1 313
FL-Next: tr=Hypoxia-inducible factor 2 alpha; Micropogonias undulatus (Atlantic croaker). 0.0
Sma3: Hypoxia-inducible factor 2 alpha 1.662e-13
AutoFact: Hypoxia-inducible factor 2 alpha n=1 Tax=Micropogonias undulatus RepID=Q2ESI0_MICUN 6.0e-25
Internal
hypoth_v1_unigene29344 Hypothalamus v1 158
FL-Next: tr=Chromosome 16 SCAF14974, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Period 4 9.952e-10
AutoFact: per2, fj43b09, wu:fj43b09; period homolog 2 (Drosophila); K02633 period circadian protein 1.0e-15
Internal
hypoth_v1_unigene30903 Hypothalamus v1 337
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Nuclear receptor coactivator 2 4.14e-20
AutoFact: Nuclear receptor coactivator 2 n=1 Tax=Dicentrarchus labrax RepID=E6ZIN5_DICLA 1.0e-34
Internal
hypoth_v1_unigene33186 Hypothalamus v1 283
FL-Next: tr=Hypoxia-inducible factor 1 alpha; Oryzias melastigma (Indian medaka). 0.0
Sma3: Hypoxia-inducible factor 1 alpha 0.0
AutoFact: Hypoxia-inducible factor 1 alpha n=2 Tax=Percomorpha RepID=A5H737_PLAFE 8.0e-36
Internal
hypoth_v1_unigene36285 Hypothalamus v1 231
FL-Next: tr=Aryl hydrocarbon receptor nuclear translocator 2; Fundulus heteroclitus (Killifish) (Mummichog). 0.0
Sma3: Aryl hydrocarbon receptor nuclear translocator 2 1.735e-13
AutoFact: Aryl hydrocarbon receptor nuclear translocator 2 n=1 Tax=Fundulus heteroclitus RepID=Q9YHW4_FUNHE 8.0e-21
C-terminus
hypoth_v1_unigene42285 Hypothalamus v1 159
FL-Next: tr=Potassium voltage-gated channel subfamily H member 1; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Potassium voltage-gated channel, subfamily H (eag-related), member 1 4.371e-09
AutoFact: Potassium voltage-gated channel, subfamily H (Eag-related), member 1 n=3 Tax=Danio rerio RepID=B3DHL9_DANRE 4.0e-21
Internal
hypoth_v1_unigene49285 Hypothalamus v1 320
Sma3: Period 2 2.975e-09
Coding

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain