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Assembly Name: Hypothalamus v1

Name: LDLR class B repeat

Term: IPR000033  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
hypoth_v1_unigene601 Hypothalamus v1 471
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Si:ch211-181p13.1 2.392e-09
AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 7.0e-26
Internal
hypoth_v1_unigene1823 Hypothalamus v1 642
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Low-density lipoprotein receptor-related protein 1 1.333e-09
AutoFact: LRP1 (Fragment) n=7 Tax=Percomorpha RepID=O73809_TAKRU 0.0
Internal
hypoth_v1_unigene9252 Hypothalamus v1 170
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: low-density lipoprotein receptor-related protein 1-like 3.0e-12
Internal
hypoth_v1_unigene9309 Hypothalamus v1 386
FL-Next: tr=Very low-density lipoprotein receptor; Solea senegalensis (Senegalese sole). 0.0
Sma3: Vitellogenin receptor 5.322e-20
AutoFact: Very low-density lipoprotein receptor n=1 Tax=Solea senegalensis RepID=Q2L4C1_SOLSE 2.0e-32
C-terminus
hypoth_v1_unigene11947 Hypothalamus v1 493
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: PREDICTED: low-density lipoprotein receptor-related protein 8-like n=1 Tax=Danio rerio RepID=UPI0002026FA6 6.0e-06
N-terminus
hypoth_v1_unigene13350 Hypothalamus v1 1169
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Low-density lipoprotein receptor-related protein 1 3.645e-09
AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 0.0
C-terminus
hypoth_v1_unigene15423 Hypothalamus v1 301
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 5.0e-10
C-terminus
hypoth_v1_unigene21238 Hypothalamus v1 295
FL-Next: tr=Nidogen-1; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: PREDICTED: nidogen 1 n=1 Tax=Taeniopygia guttata RepID=UPI000194C1E5 2.0e-09
Internal
hypoth_v1_unigene22290 Hypothalamus v1 294
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Si:dkey-184d2.1 7.401e-10
AutoFact: low density lipoprotein receptor related protein-deleted in tumor 6.0e-08
Internal
hypoth_v1_unigene25981 Hypothalamus v1 215
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Nidogen 2b (osteonidogen) 4.208e-09
AutoFact: nid2a, nid2; nidogen 2a (osteonidogen); K06826 nidogen (entactin) 1.0e-28
Internal
hypoth_v1_unigene28371 Hypothalamus v1 145
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: Unassigned protein
C-terminus
hypoth_v1_unigene31191 Hypothalamus v1 418
FL-Next: tr=Nidogen-1; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Nidogen 1a 1.168e-09
AutoFact: Nidogen-1 n=3 Tax=Percomorpha RepID=D9IEW6_TETNG 0.0
C-terminus
hypoth_v1_unigene33881 Hypothalamus v1 216
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Si:dkey-184d2.1 2.056e-10
AutoFact: Novel protein similar to vertebrate low density lipoprotein-related protein 1B (Deleted in tumors) (LRP1B) (Fragment) n=1 Tax=Danio rerio RepID=Q1L8K6_DANRE 6.0e-11
Internal
hypoth_v1_unigene34446 Hypothalamus v1 109
FL-Next: tr=Chromosome 9 SCAF14991, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
AutoFact: fj39b01; wu:fj39b01; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 4.0e-08
Internal
hypoth_v1_unigene35801 Hypothalamus v1 227
FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Low-density lipoprotein receptor-related protein 2 8.628e-10
AutoFact: lrp2, im:680590; low density lipoprotein-related protein 2; K06233 low density lipoprotein-related protein 2 3.0e-31
Internal
hypoth_v1_unigene39652 Hypothalamus v1 297
FL-Next: tr=Low-density lipoprotein receptor-related protein 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: lrp2, im:680590; low density lipoprotein-related protein 2; K06233 low density lipoprotein-related protein 2 3.0e-23
C-terminus
hypoth_v1_unigene42175 Hypothalamus v1 302
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Si:ch211-181p13.1 3.721e-09
AutoFact: low density lipoprotein receptor related protein-deleted in tumor 2.0e-28
Internal
hypoth_v1_unigene47106 Hypothalamus v1 223
FL-Next: tr=Chromosome 11 SCAF14979, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Low-density lipoprotein receptor-related protein 1 3.758e-09
AutoFact: similar to alpha-2-macroglobulin receptor; K04550 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 2.0e-29
Internal

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain