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Assembly Name: Osmoregulation v2.0

Name: damaged DNA binding

Term: GO:0003684  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
cit_v2.0_unigene2476 Osmoregulation v2.0 574
FL-Next: tr=Novel protein similar to vertebrate REV1 homolog (S. cerevisiae) (REV1); Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Novel protein similar to vertebrate REV1 homolog (S. cerevisiae) (REV1) 9.766e-06
AutoFact: si:dkey-57a22.7; K03515 DNA repair protein REV1 [EC:2.7.7.-] 5.0e-18
Internal
cit_v2.0_unigene3322 Osmoregulation v2.0 516
FL-Next: tr=RAD1-like protein; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
Sma3: RAD1-like protein 3.614e-15
AutoFact: RAD1-like protein n=3 Tax=Percomorpha RepID=C1JXM2_DICLA 0.0
Internal
cit_v2.0_unigene6401 Osmoregulation v2.0 629
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Zgc:91996 6.82e-06
AutoFact: X-ray repair cross complementing protein 1-like 1.0e-31
Putative C-terminus
cit_v2.0_unigene11592 Osmoregulation v2.0 194
FL-Next: tr=Novel protein (Zgc:113032); Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: xpc, wu:fb12d05, wu:fb12d09, zgc:113032; xeroderma pigmentosum, complementation group C; K10838 xeroderma pigmentosum group C-complementing protein 2.0e-11
Internal
cit_v2.0_unigene14065 Osmoregulation v2.0 854
FL-Next: tr=Xeroderma pigmentosum, complementation group C; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: xpc, rad4, xp3, xpcc; xeroderma pigmentosum, complementation group C 0.0
C-terminus
cit_v2.0_unigene21486 Osmoregulation v2.0 1125
FL-Next: tr=Tumor suppressor protein p53; Epinephelus coioides (Orange-spotted grouper) (Epinephelus nebulosus). 0.0
Sma3: Cellular tumor antigen p53 0.0
AutoFact: Cellular tumor antigen p53 n=1 Tax=Paralichthys olivaceus RepID=A5JSV4_PAROL 0.0
C-terminus
cit_v2.0_unigene24429 Osmoregulation v2.0 882
FL-Next: tr=Zgc:123349; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: RAD23 homolog B 1.299e-09
AutoFact: PREDICTED: UV excision repair protein RAD23 homolog B n=4 Tax=Theria RepID=UPI0000F2DED9 3.0e-23
N-terminus
cit_v2.0_unigene24601 Osmoregulation v2.0 175
FL-Next: tr=DN p63 alpha 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Tumor protein p63 1.597e-13
AutoFact: Isoform 9 of Tumor protein 63 n=1 Tax=Homo sapiens RepID=Q9H3D4-9 6.0e-16
Putative C-terminus
cit_v2.0_unigene27391 Osmoregulation v2.0 1348
FL-Next: tr=Nei endonuclease VIII-like 1; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Uncharacterized protein 0.0
AutoFact: neil1, MGC56361, zgc:56361; nei endonuclease VIII-like 1 (E. coli) (EC:4.2.99.18); K10567 endonuclease VIII-like 1 [EC:3.2.2.- 4.2.99.18] 0.0
N-terminus
cit_v2.0_unigene28086 Osmoregulation v2.0 414
FL-Next: tr=DNA excision repair protein ERCC-1; Salmo salar (Atlantic salmon). 0.0
AutoFact: ercc1, MGC173912, MGC77511, zgc:77511; excision repair cross-complementing rodent repair deficiency, complementation group 1; K10849 DNA excision repair protein ERCC-1 0.0
Internal
cit_v2.0_unigene30214 Osmoregulation v2.0 440
FL-Next: tr=Novel protein (Zgc:77754); Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: RecA homolog Dmc1 4.811e-10
AutoFact: Novel protein (Zgc:77754) n=2 Tax=Euteleostomi RepID=Q5TYR0_DANRE 3.00004e-41
C-terminus
cit_v2.0_unigene31577 Osmoregulation v2.0 407
FL-Next: tr=Chromosome 9 SCAF15033, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: 8-oxoguanine DNA glycosylase 6.598e-15
AutoFact: ogg1, zgc:158858; 8-oxoguanine DNA glycosylase (EC:4.2.99.18); K03660 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] 0.0
Internal
cit_v2.0_unigene34618 Osmoregulation v2.0 368
FL-Next: tr=RecA homolog Rad51; Oreochromis niloticus (Nile tilapia) (Tilapia nilotica). 0.0
Sma3: RecA homolog Dmc1 1.055e-09
AutoFact: DNA repair protein RAD51 homolog 1 n=16 Tax=Amniota RepID=RAD51_MOUSE 0.0
Internal
cit_v2.0_unigene36455 Osmoregulation v2.0 397
FL-Next: tr=DNA polymerase iota; Salmo salar (Atlantic salmon). 0.0
Sma3: DNA polymerase iota 1.695e-10
AutoFact: wu:fc27h11; zgc:110185 (EC:2.7.7.7); K03510 DNA polymerase iota subunit [EC:2.7.7.7] 3.0e-37
Internal
cit_v2.0_unigene40505 Osmoregulation v2.0 277
FL-Next: tr=Novel protein (Zgc:113032); Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: xpc, wu:fb12d05, wu:fb12d09, zgc:113032; xeroderma pigmentosum, complementation group C; K10838 xeroderma pigmentosum group C-complementing protein 4.0e-32
Internal
cit_v2.0_unigene41813 Osmoregulation v2.0 231
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: neil3, zgc:103553; nei endonuclease VIII-like 3 (E. coli); K10569 endonuclease VIII-like 3 8.0e-19
Internal
cit_v2.0_unigene50997 Osmoregulation v2.0 158
FL-Next: tr=Rad1 protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: RAD1-like protein 2.625e-15
AutoFact: RAD1 homolog (S. pombe) n=5 Tax=Elopocephala RepID=Q6P2T4_DANRE 5.0e-18
C-terminus
cit_v2.0_unigene54304 Osmoregulation v2.0 229
FL-Next: tr=Zgc:91996; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Zgc:91996 3.255e-06
AutoFact: zgc:91996; K10803 DNA-repair protein XRCC1 1.0e-11
C-terminus
cit_v2.0_unigene59281 Osmoregulation v2.0 217
FL-Next: tr=RAD1-like protein; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
Sma3: RAD1-like protein 3.295e-15
AutoFact: RAD1-like protein n=3 Tax=Percomorpha RepID=C1JXM2_DICLA 5.0e-13
N-terminus

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain