Logo_sudoe_cb Cabecera_solea2 Img_right
HomeAssembliesBLASTSearchInstitutions

Assembly Name: Osmoregulation v2.0

Name: chromatin binding

Term: GO:0003682  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
cit_v2.0_unigene520 Osmoregulation v2.0 265
FL-Next: tr=WW domain-containing adapter protein with coiled-coil; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
Sma3: WW domain-containing adapter protein with coiled-coil 1.277e-15
AutoFact: waca, wac, wu:fc13f04, wu:fj68f01, zgc:55755; WW domain containing adaptor with coiled-coil a 5.0e-34
Internal
cit_v2.0_unigene2261 Osmoregulation v2.0 242
FL-Next: tr=Lymphocyte enhancer binding factor 1; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Lymphoid enhancer-binding factor 1 1.255e-09
AutoFact: Lymphocyte enhancer binding factor 1 n=1 Tax=Danio rerio RepID=Q9W7C0_DANRE 8.0e-22
Internal
cit_v2.0_unigene3473 Osmoregulation v2.0 497
FL-Next: tr=Forkhead box P4; Oryzias latipes (Medaka fish) (Japanese ricefish). 0.0
Sma3: Forkhead box P4 9.994e-22
AutoFact: Rassf8 protein-like; K09409 forkhead box protein P 2.0e-17
Internal
cit_v2.0_unigene5049 Osmoregulation v2.0 283
FL-Next: sp=Protein Jumonji; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Jumonji/ARID domain-containing protein 2 2.524e-10
AutoFact: jarid2b, si:dkey-211c3.1; jumonji, AT rich interactive domain 2b 2.0e-22
Internal
cit_v2.0_unigene5566 Osmoregulation v2.0 449
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Williams syndrome transcription factor homolog 3.041e-10
AutoFact: Tyrosine-protein kinase BAZ1B n=4 Tax=Danio rerio RepID=BAZ1B_DANRE 3.0e-20
Internal
cit_v2.0_unigene6145 Osmoregulation v2.0 267
FL-Next: sp=DNA topoisomerase 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: DNA topoisomerase 2 1.365e-25
AutoFact: top2a, MGC92574, fc08c07, wu:fc08c07; topoisomerase (DNA) II alpha (EC:5.99.1.3); K03164 DNA topoisomerase II [EC:5.99.1.3] 3.0e-14
Internal
cit_v2.0_unigene10801 Osmoregulation v2.0 476
FL-Next: tr=E3 ubiquitin-protein ligase RNF8; Salmo salar (Atlantic salmon). 0.0
Sma3: Ring finger protein 8 9.278e-10
AutoFact: MGC55936, Rnf8, fc66f09, wu:fc66f09, zgc:77313; zgc:55936 (EC:6.3.2.-); K10667 E3 ubiquitin-protein ligase RNF8 [EC:6.3.2.19] 4.0e-39
N-terminus
cit_v2.0_unigene13472 Osmoregulation v2.0 329
FL-Next: sp=Mini-chromosome maintenance complex-binding protein; Salmo salar (Atlantic salmon). 0.0
Sma3: Mini-chromosome maintenance complex-binding protein 2.32e-24
AutoFact: c10orf119, cb136, sb:cb136, wu:fi19h07, zgc:55981; c10orf119 homolog (H. sapiens) 7.00005e-41
Internal
cit_v2.0_unigene13845 Osmoregulation v2.0 665
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Transcription factor 7-like 2 (T-cell specific, HMG-box) 5.786e-11
AutoFact: Transcription factor Tcf4 variant M9 n=5 Tax=Clupeocephala RepID=Q8JIY2_DANRE 0.0
Internal
cit_v2.0_unigene14285 Osmoregulation v2.0 471
FL-Next: sp=Tyrosine-protein kinase BAZ1B; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Williams syndrome transcription factor homolog 2.987e-10
AutoFact: bromodomain adjacent to zinc finger domain, 1B-like 4.0e-26
Putative C-terminus
cit_v2.0_unigene14895 Osmoregulation v2.0 497
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Williams syndrome transcription factor homolog 4.676e-10
AutoFact: similar to bromodomain adjacent to zinc finger domain, 1B; K11658 bromodomain adjacent to zinc finger domain protein 1B 0.0
Internal
cit_v2.0_unigene15326 Osmoregulation v2.0 559
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: RING finger protein 168 8.961e-15
AutoFact: rnf168, fi30d02, wu:fi30d02, zgc:64185; ring finger protein 168 (EC:6.3.2.-) 2.0e-29
N-terminus
cit_v2.0_unigene15420 Osmoregulation v2.0 954
FL-Next: tr=Heterogeneous nuclear ribonucleoprotein G; Anoplopoma fimbria (Sablefish). 0.0
Sma3: Cold-inducible RNA-binding protein 8.048e-38
AutoFact: Heterogeneous nuclear ribonucleoprotein G n=4 Tax=Percomorpha RepID=Q197X9_HAPBU 1.99965e-42
N-terminus
cit_v2.0_unigene19709 Osmoregulation v2.0 105
FL-Next: tr=Chromosome 18 SCAF15038, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Lymphoid enhancer-binding factor 1 7.57e-10
AutoFact: lef1; lymphocyte enhancer binding factor 1; K04492 lymphoid enhancer-binding factor 1 1.0e-10
Internal
cit_v2.0_unigene21486 Osmoregulation v2.0 1125
FL-Next: tr=Tumor suppressor protein p53; Epinephelus coioides (Orange-spotted grouper) (Epinephelus nebulosus). 0.0
Sma3: Cellular tumor antigen p53 0.0
AutoFact: Cellular tumor antigen p53 n=1 Tax=Paralichthys olivaceus RepID=A5JSV4_PAROL 0.0
C-terminus
cit_v2.0_unigene22794 Osmoregulation v2.0 457
FL-Next: tr=Foxp3-like protein; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Forkhead box P2 5.666e-22
AutoFact: forkhead box P3-like 4.99997e-41
Putative C-terminus
cit_v2.0_unigene24601 Osmoregulation v2.0 175
FL-Next: tr=DN p63 alpha 2; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Tumor protein p63 1.597e-13
AutoFact: Isoform 9 of Tumor protein 63 n=1 Tax=Homo sapiens RepID=Q9H3D4-9 6.0e-16
Putative C-terminus
cit_v2.0_unigene29597 Osmoregulation v2.0 501
FL-Next: tr=Chromosome 15 SCAF14542, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: WW domain-containing adapter protein with coiled-coil 8.452e-16
AutoFact: waca, wac, wu:fc13f04, wu:fj68f01, zgc:55755; WW domain containing adaptor with coiled-coil a 2.0e-19
N-terminus
cit_v2.0_unigene31765 Osmoregulation v2.0 404
FL-Next: sp=Lysine-specific demethylase 8; Salmo salar (Atlantic salmon). 0.0
Sma3: JmjC domain-containing protein 5 3.217e-15
AutoFact: jmjd5, MGC173863, zgc:173863, zgc:91962; jumonji domain containing 5 3.0e-34
Internal
cit_v2.0_unigene33001 Osmoregulation v2.0 389
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: WW domain containing adaptor with coiled-coil b 1.263e-10
AutoFact: waca, wac, wu:fc13f04, wu:fj68f01, zgc:55755; WW domain containing adaptor with coiled-coil a 2.0e-13
Internal

Go to Annotations List

Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain