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Assembly Name: Osmoregulation v2.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
cit_v2.0_unigene22 Osmoregulation v2.0 569
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Origin recognition complex subunit 4 2.777e-10
AutoFact: orc4; zgc:85772; K02606 origin recognition complex subunit 4 0.0
Putative C-terminus
cit_v2.0_unigene30 Osmoregulation v2.0 399
FL-Next: tr=Enhancer of zeste homolog 1 (Drosophila); Oryzias latipes (Medaka fish) (Japanese ricefish). 0.0
Sma3: Enhancer of zeste homolog 2 7.984e-14
AutoFact: ezh1, MGC136829, zgc:136829; enhancer of zeste homolog 1 (Drosophila) 0.0
Internal
cit_v2.0_unigene116 Osmoregulation v2.0 456
FL-Next: tr=Chromosome undetermined SCAF12247, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: AT rich interactive domain 2 (ARID, RFX-like) 7.577e-10
AutoFact: AT-rich interactive domain-containing protein 2-like 0.0
Internal
cit_v2.0_unigene209 Osmoregulation v2.0 454
FL-Next: tr=Transposase; Salmo salar (Atlantic salmon). 0.0
Sma3: Transposase 9.045e-12
AutoFact: Transposase n=1 Tax=Rana pipiens RepID=Q6X1Z4_RANPI 0.0
C-terminus
cit_v2.0_unigene394 Osmoregulation v2.0 188
Sma3: Transcription factor cmyb 1.403e-09
unknown
cit_v2.0_unigene420 Osmoregulation v2.0 405
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Si:dkey-91d10.8 3.378e-11
AutoFact: PREDICTED: si:dkey-91d10.8 n=1 Tax=Danio rerio RepID=UPI000175F505 0.0
Internal
cit_v2.0_unigene660 Osmoregulation v2.0 242
FL-Next: tr=Novel protein similar to H.sapiens INOC1, INO80 complex homolog 1 (S. cerevisiae) (INOC1); Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: si:ch211-244p18.3; K11665 DNA helicase INO80 [EC:3.6.1.-] 3.0e-29
Internal
cit_v2.0_unigene770 Osmoregulation v2.0 709
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Ligand dependent nuclear receptor corepressor-like 2.726e-10
AutoFact: ligand dependent nuclear receptor corepressor-like 9.80909e-45
N-terminus
cit_v2.0_unigene869 Osmoregulation v2.0 427
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Chromosome 11 SCAF14979, whole genome shotgun sequence. 8.284e-06
AutoFact: pbrm1; polybromo 1; K11757 protein polybromo-1 2.0e-32
Internal
cit_v2.0_unigene904 Osmoregulation v2.0 622
FL-Next: tr=All-1 related protein; Takifugu rubripes (Japanese pufferfish) (Fugu rubripes). 0.0
Sma3: Myeloid/lymphoid or mixed-lineage leukemia 2 2.387e-08
AutoFact: All-1 related protein n=2 Tax=Takifugu rubripes RepID=O93321_TAKRU 0.0
Internal
cit_v2.0_unigene936 Osmoregulation v2.0 431
FL-Next: tr=Nuclear receptor coactivator 2; Dicentrarchus labrax (European seabass) (Morone labrax). 0.0
Sma3: Nuclear receptor coactivator 2 4.14e-20
AutoFact: Nuclear receptor coactivator 2 n=1 Tax=Dicentrarchus labrax RepID=E6ZIN5_DICLA 0.0
Internal
cit_v2.0_unigene984 Osmoregulation v2.0 409
FL-Next: tr=Chromosome 1 SCAF13708, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: Histone H2A deubiquitinase MYSM1 1.962e-13
AutoFact: mysm1, im:7153144, si:ch211-59d15.8; Myb-like, SWIRM and MPN domains 1 (EC:3.1.2.15); K11865 protein MYSM1 0.0
Internal
cit_v2.0_unigene999 Osmoregulation v2.0 554
FL-Next: tr=Chromosome 5 SCAF14581, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: CCCTC-binding factor (zinc finger protein) 6.975e-06
AutoFact: Herpes_gp2 domain containing protein 0.0001
C-terminus
cit_v2.0_unigene1236 Osmoregulation v2.0 338
FL-Next: tr=Putative uncharacterized protein; Gallus gallus (Chicken). 0.0
AutoFact: ighmbp2l, MGC110400, si:ch211-238n5.2, zgc:110400; immunoglobulin mu binding protein 2, like 7.0e-12
Internal
cit_v2.0_unigene1246 Osmoregulation v2.0 1248
FL-Next: tr=Chromosome 16 SCAF14974, whole genome shotgun sequence; Tetraodon nigroviridis (Green puffer). 0.0
Sma3: GekBS038P 0.0
AutoFact: Histone H3 n=1 Tax=Harpegnathos saltator RepID=E2BMC4_9HYME 0.0
Complete
cit_v2.0_unigene1457 Osmoregulation v2.0 397
Sma3: OTU domain containing 7A 6.355e-06
AutoFact: Keratin_B2 multi-domain protein 6.0e-08
Coding
cit_v2.0_unigene1470 Osmoregulation v2.0 453
FL-Next: tr=Paired box gene 2a; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Paired box gene 2a 3.038e-10
AutoFact: pax2a, PAXZF-B, Pax-2, cb378, noi, pax-b, pax2.1, pax2a1, pax[zf-b], paxb; paired box gene 2a; K09383 paired box protein 2/5 0.0
Internal
cit_v2.0_unigene1479 Osmoregulation v2.0 366
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
Sma3: Chromodomain helicase DNA binding protein 8 7.469e-15
AutoFact: PREDICTED: chromodomain-helicase-DNA-binding protein 6-like n=1 Tax=Anolis carolinensis RepID=UPI00020395A4 0.0
Internal
cit_v2.0_unigene1480 Osmoregulation v2.0 451
FL-Next: tr=Transcription factor Dp-1; Larimichthys crocea (Croceine croaker) (Pseudosciaena crocea). 0.0
Sma3: Transcription factor Dp-1 2.847e-14
AutoFact: Transcription factor Dp-1 n=4 Tax=Percomorpha RepID=D2CFQ6_LARCR 0.0
C-terminus
cit_v2.0_unigene1492 Osmoregulation v2.0 349
FL-Next: tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio). 0.0
AutoFact: rad51c, zgc:101596; rad51 homolog C (S. cerevisiae); K10870 RAD51-like protein 2 9.99995e-41
Internal

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Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain