SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene91028

Length: 1856 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene91028 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein 82 (Fragment) n=2 Tax=Solanaceae RepID=HSP82_TOBAC	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	heat shock protein 90	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	94%
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	94%
Blast2go	response to heat	GO:0009408	Biological Process	94%
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%
Blast2go	cytosol	GO:0005829	Cellular Component	94%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUB7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 31 aas, putative chimeric sequence, W1: There is no M at the beginning, your sequence is shorter than subject: 441 - 466

Fln protein: TSEAQGSDLATSSLNSFAASNNLICRNRNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYAKFYEAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKRKGYEVLFMVDAIDEYAIGQLKEYDGKKLVSATKEGLKLEETEEEKKKKEEKKAAFENLCKVMKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPENAIMEELRKRAEADKHDKSVKDLVMLLYETALLTSGFSLEEPNTFAARIHRMLKLGLSIEDDVTAEVDADMPPLEDDSSIQEESKMEEVD*

Protein Length: 442

Fln nts: TTTTTTAATGGTTCAATACTTATTAATATGCCCTCCGTCCTGTTTACAGCTATAAGGGTTTTCATCCATGACTCAGGAACACGATCTACACAGAACTTCACATTAATATTATTAAACTTTAACAGGATTATAAAAGGTTTCAAGCATAAATTAAAATTTACGCAGAACAGAGACCAGCAACAGTTTGGTAACCACCGCGACCGCCATTATAATTCAGGGAAATATAACATTCATATATTCGGTATTTGAATTTTGCCAAAGTGAGTAGAGTTGCCACGTAGGAATTTGAGACGAGAGCTATGTCCGCGACTGGCGCTCCAGAAAAATACATGCCGAACTACTGTCGCCAACGATATGGTGAAATACTATGCAAGTAGTTTCAAACCGCCATCTTGAACCAGTGAAGCTCAGGGCTCGGACTTAGCCACATCGTCTCTCAATTCTTTTGCAGCTTCTAACAATTTAATTTGCAGAAACAGAAATGACTGGGAGGAACACTTGGCCGTGAAGCATTTTTCTGTGGAGGGTCAGTTGGAATTCAAGGCTATTCTCTTTGTTCCCAAAAGGGCTCCGTTCGATCTGTTTGACACCAGGAAGAAGCTCAACAACATTAAGCTGTATGTGAGAAGGGTTTTCATAATGGACAACTGTGAGGAGCTTATTCCCGAATACCTAGGGTTTGTCAAAGGTGTGGTGGACTCCGATGATCTGCCCCTGAATATCTCTCGGGAGATGCTGCAGCAGAACAAGATTCTGAAGGTGATCCGGAAGAATTTGGTGAAGAAATGTATTGAGATGTTCAACGAGATTGCCGAGAACAAAGAGGACTATGCCAAGTTCTACGAGGCCTTTTCGAAGAACTTAAAATTGGGAATACATGAGGACAGCCAGAACAGGGCTAAGCTTGCAGATTTGTTGAGATATCACTCGACAAAGAGCGGAGACGAGATGACGAGCCTCAAGGACTATGTGACCCGAATGAAAGAGGGGCAGAAGGACATCTATTATATTACCGGAGAGAGCAAGAAGGCGGTGGAGAATTCTCCGTTCTTGGAGAGACTGAAAAGGAAAGGATATGAAGTTCTTTTTATGGTGGATGCCATCGATGAGTATGCCATAGGGCAGCTCAAGGAGTACGACGGCAAGAAGCTTGTTTCTGCGACCAAAGAAGGGCTGAAGCTTGAGGAAACAGAGGAGGAAAAGAAGAAGAAGGAAGAGAAGAAAGCTGCCTTTGAGAACCTGTGCAAAGTGATGAAGGACATCTTGGGCGACAAGGTGGAGAAGGTAGTGGTGTCGGATCGCATTGTGGACTCTCCGTGCTGTCTGGTGACTGGCGAGTATGGATGGACGGCGAACATGGAGAGAATAATGAAGGCCCAGGCCTTGCGCGACAGCTCCATGTCGTCCTACATGTCCAGCAAGAAAACAATGGAAATCAATCCGGAGAACGCCATCATGGAGGAGCTGAGAAAGAGAGCCGAGGCGGACAAGCATGACAAATCGGTGAAGGATCTGGTGATGCTCTTGTATGAGACTGCACTGCTCACATCAGGATTCAGTCTGGAGGAGCCGAACACATTCGCTGCCAGGATACACAGGATGCTTAAGCTTGGGCTAAGCATCGAGGACGATGTCACCGCTGAGGTGGATGCAGACATGCCGCCTCTGGAAGATGATTCCTCCATCCAGGAGGAGAGCAAGATGGAGGAGGTAGACTAA___GTAGCCTCTGGAAGATGATGCCTGCATCCAGTACTAGAGCAAGATGGAGGAGGGAGACTAAGTCTCTTGACTCCAGAAGCAAACGAATTCTGTGCTAGATTTCTGGAAATGCATAATTTGCGGGAGGGTTAACTTTT

Fln Alignment:

sp_v1.1_unigene91028___EEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKLN-NIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKED-----------------------YAKFYEAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKRKGYEVLFMVDAIDEYAIGQLKEYDGKKLVSAXXXXXXXXXXXXXXXXXXXXKAAFENLCKVMKDIL-GDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDXXXXXXXXSKKTMEINPENAIMEELRKRAEADKHDKSVKDLVMLLYETALLTSGFSLEEPNTFAARIHRMLKLGLSIEDDVTAEVDADMPPLEDDSSIQEESKMEEVD
A9NUB7_______________EKPLAWSHFTAEGDVEFKSILFIPPKAPQDLYESYYNAKANIKLYVRRVFISDEFEELLPKYLGFLMGIVDSDTLPLNVSREMLQQHNSLKTIKKKLIRKALDMIRRIAEEDPDESDAKGKTDVESESEPNTEKKGKYVKFWNEFGKSIKLGIIEDASNRNRLAKLLRFESTKSGNKLASLDQYISRMKAGQKDIYYITGSSKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKEIKD----SFKELTNWWKDILSSENVDSVKISNRLDNTPGVVVTSKYGWSANMERIMQSQTLSDANRQSYMRGKRVLEINPRHPIIKELRERVTQSPEDENIKQTARLIYQTALMESGFILNDPKEFASSIYSTIKTTLNVNPDATVEEDDE---TEEEVEVETKEEVEKVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain