SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90982

Length: 509 nt

UniGene Fasta

>sp_v1.1_unigene90982
GTTAGATGAAGATGATGTTCATCACTTGTCACATCCAGATGCTGATCATGATGACCATGATGTTAATGAGCTTGGTGAGGATTATGATGAGGATGATATACTGGAAGATGAAGAAGATGAGGATGACGAGAATAACTTTATATTGAGATTGGAGGATGGGATTAATGTGTTTGATCATTTTGAAGTTCTTGGTCGAGCTGAAGGTGATTTCCCATCTGATCCATTTCATGTGATGCCTATTGAAGAAGTTTTTGGTGCAAATCGGCGAACGGGACGCACTACCTCTATCTATAATCTTCTTGGAAGGACTGAGGATCGTGGAACAGCATTTCAACATCCCCTCCTCATTGGACCAACTGCCCCATCTAGATCAATGCGTCGTCGAGTCATAGAAAACGATAGGGTTGTCACAGAGAGTAATATTGAAAATACTTCAGCCTCATCACATCTGGACTCTATTTTTCGAACACTTCGAAGTGGAAGGCCAGGAAATCGTTTGAGTAGCTGGG

Ace file of the UniGene sp_v1.1_unigene90982

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 ubiquitin protein ligase upl2, putative n=1 Tax=Ricinus communis RepID=B9SMZ3_RICCO	-	-	3.0e-33	49%
FL-Next	tr=E3 ubiquitin protein ligase upl2, putative; Ricinus communis (Castor bean).	-	-	0.0	52%
Blast2go	e3 ubiquitin protein ligase	-	-	4.50386e-33	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SMZ3

Fln msg: Distance to subject end: 1314 aas, your sequence is shorter than subject: 169 - 3666

Fln protein: LDEDDVHHLSHPDADHDDHDVNELGEDYDEDDILEDEEDEDDENNFILRLEDGINVFDHFEVLGRAEGDFPSDPFHVMPIEEVFGANRRTGRTTSIYNLLGRTEDRGTAFQHPLLIGPTAPSRSMRRRVIENDRVVTESNIENTSASSHLDSIFRTLRSGRPGNRLSSW

Protein Length: 170

Fln nts: GTTAGATGAAGATGATGTTCATCACTTGTCACATCCAGATGCTGATCATGATGACCATGATGTTAATGAGCTTGGTGAGGATTATGATGAGGATGATATACTGGAAGATGAAGAAGATGAGGATGACGAGAATAACTTTATATTGAGATTGGAGGATGGGATTAATGTGTTTGATCATTTTGAAGTTCTTGGTCGAGCTGAAGGTGATTTCCCATCTGATCCATTTCATGTGATGCCTATTGAAGAAGTTTTTGGTGCAAATCGGCGAACGGGACGCACTACCTCTATCTATAATCTTCTTGGAAGGACTGAGGATCGTGGAACAGCATTTCAACATCCCCTCCTCATTGGACCAACTGCCCCATCTAGATCAATGCGTCGTCGAGTCATAGAAAACGATAGGGTTGTCACAGAGAGTAATATTGAAAATACTTCAGCCTCATCACATCTGGACTCTATTTTTCGAACACTTCGAAGTGGAAGGCCAGGAAATCGTTTGAGTAGCTGGG

Fln Alignment:

sp_v1.1_unigene90982___LDEDDVHHLSHPDADHDDHDVNXXXXXXXXXXXXXXXXXXXXXNNFILRLEDGIN---VFDHFEVLGRAEGDFPSDPFHVMPIEEVFGANRRTGRTTSIYNLLGRTEDRGTAFQHPLLIGPTAPSRSMRRRVIENDRVV--TESNIENTSASSHLDSIFRTLRSGRPGNRLSSW
B9SMZ3_______________LEEDEVHHLPHPDTDQDDHDIDDDEFDEELLEEDDEDEEEDD-DGVILRLEEGINGINVFDHIEVFGR-DHSFPNETLHVMPVE-VFGS-RRQGRTTSIYSLLGRSGDSAAPSRHPLLVGPSS-SHSAASRQLDNARDVGFSDRNLENT--SSQLDTIFRSLRNGRHGHRLNLW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain