SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90930

Length: 367 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene90930
ACAATCTCAATGGTAGCATTCCCACTTCTTTGTCAAATCTCTTTAACTTGACTATCCTCAATTTATGGGGAAATCAACTTAGTGGAACATACCAAATTCCATTGGAAATTGTTCAAAACTAAGGGAACTCAATCTAAGCTACAACAAGTTAAGTGGGAGTGTGCCAATACAACTTGGTAAGCTATACCTCCTTGAAAAATTATACTTGAATGTCAATCAACTTGGTAGTGATACTGCTACAACCATGCCTTTTCTTATAGCCCTTACCAATTGTTCCCACCTAAAAGACCTAAACTTGAGAGACAATAAACTCGCTGGTGTCTTACCCCTTGCCATAGGAAAACTTTCTACCAATTTGTCTTACAGA

Ace file of the UniGene sp_v1.1_unigene90930 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase-like protein n=2 Tax=Arabidopsis RepID=Q9SD62_ARATH	-	-	7.0e-13	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	protein kinase xa21	-	-	1.19692e-13	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 212 aas, your sequence is shorter than subject: 122 - 551

Fln protein: NLNGSIPTSLSNLFNLTILNLWGNQLSGxxxxxxxxCSKLRELNLSYNKLSGSVPIQLGKLYLLEKLYLNVNQLGSDTATTMPFLIALTNCSHLKDLNLRDNKLAGVLPLAIGKLSTNLSYR

Protein Length: 123

Fln nts: ACAATCTCAATGGTAGCATTCCCACTTCTTTGTCAAATCTCTTTAACTTGACTATCCTCAATTTATGGGGAAATCAACTTAGTGGAxxxxxxxxxxxxxxxxxxxxxxxxTGTTCAAAACTAAGGGAACTCAATCTAAGCTACAACAAGTTAAGTGGGAGTGTGCCAATACAACTTGGTAAGCTATACCTCCTTGAAAAATTATACTTGAATGTCAATCAACTTGGTAGTGATACTGCTACAACCATGCCTTTTCTTATAGCCCTTACCAATTGTTCCCACCTAAAAGACCTAAACTTGAGAGACAATAAACTCGCTGGTGTCTTACCCCTTGCCATAGGAAAACTTTCTACCAATTTGTCTTACAGA

Fln Alignment:

sp_v1.1_unigene90930___LNGSIPTSLSNLFNLTILNLWGNQLSGTxxxxxxxxxxxxxxxxxxxxxIPNSIGNCSKLRELNLSYNKLSGSVPIQXXXXXXXXXXXLNVNQLGSDTATTMPFLIALTNCSHLKDLNLRDNKLAGVLPLAIGKLSTNLS
B8LRW5_______________LNGSIPSELGLLRNLKFLWLGINKLTGSxxxxxxxxxxxxxxxxxxxxxIPKTLANCSHLRVLDLTDNQLTGTVPVELGRLFRLERLFLRRNQLVSGSTTTLPILTALSNCPFLEQIHLGANHLTGTLLSSIQQLSTQLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain