SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90928

Length: 183 nt

UniGene Fasta

>sp_v1.1_unigene90928
CATGGACACACCTCTTCACCTCCTCTTTCTTTTATTGGCCTCCTCGGCAGCTCTTGCTTCTGCAAATTTCTACAATGATGTCGACATTACATGGGGTAATGATCGTGCTAAAATCGGTTGTGGTATTCAATCCAAGCAAGAGTATCTATTTGCCAAGATTGATATCCAAATCAAGTTGGTACC

Ace file of the UniGene sp_v1.1_unigene90928

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xyloglucan endotransglycosylase 1 (Fragment) n=1 Tax=Pinus radiata RepID=B1NA42_PINRA	-	-	1.0e-12	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	xyloglucan endotransglycosylase 1	-	-	1.93435e-12	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLP1

Fln msg: Distance to subject end: 195 aas, atg_distance in limit (1-15): atg_distance = 3, your sequence is shorter than subject: 60 - 273

Fln protein: MDTPLHLLFLLLASSAALASANFYNDVDITWGNDRAKIGCGIQSKQEYLFAKIDIQIKLV

Protein Length: 61

Fln nts: C_-_ATGGACACACCTCTTCACCTCCTCTTTCTTTTATTGGCCTCCTCGGCAGCTCTTGCTTCTGCAAATTTCTACAATGATGTCGACATTACATGGGGTAATGATCGTGCTAAAATCGGTTGTGGTATTCAATCCAAGCAAGAGTATCTATTTGCCAAGATTGATATCCAAATCAAGTTGGTACC

Fln Alignment:

sp_v1.1_unigene90928___NFYNDVDITWGNDRAKI---------------GCGIQSKQEYLFAKIDIQIKLV
A9NLP1_______________NFYSDFDITWGDDRAKILDNGQQLQLTLDRTSGCGIQSKQEYLFAKIDMQIKLI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain