SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90894

Length: 552 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene90894
GGCCAATGTCGACTATGAGCAGATCGTTCTAGTGCAGGTCTCGCATGCTGACTTGCGTACTGCTGCCCTTCCTCCTCTCCCGCTTCTCACTTCTGTCCCGGGAAACCCTGTTCCTCAGAATCGAGATGGAGACCTTCCTCTTCACATCCGAGTCTGTGAACGAGGGACACCCAGACAAGCTGTGTGACCAGATCTCTGATGCAGTGTTGGATGCATGCCTTACCCAGGACCCTGACAGCAAGGTAGCATGCGAGACCTGCACTAAAACGAACATGGTCATGGTTTTTGGTGAAATCACCACAATGTCGACTATGAGCAGATCGTTCGCAAGACCTGCAGGGAGATCGGTTTCATTTCTGATGATGTGGGTCTTGATGCTGATCACTGCAAAGTGCTGGTTAATATTGAACAGCAGAGTCCTGACATTGCGCAGGGCGTTCATGGACACTTTACCAAAAAGCCCGAGGAGATTGGGGCCGGTGACCAGGGTCACATGTTTGGCTATGCAACTGATGAGACCCCTGAGCTGATGCCCCTGACCCATGTGCTGGC

Ace file of the UniGene sp_v1.1_unigene90894 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine synthase 1 n=1 Tax=Daucus carota RepID=METK1_DAUCA	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	s-adenosylmethionine synthetase	-	-	88%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSM3

Fln msg: Overlapping hits, possible frame ERROR between 359 and 302, Distance to subject end: 139 aas, your sequence is shorter than subject: 169 - 284

Fln protein: MLTCVLLPFLLSRFSLLSRETLFLRIEMETFLFTSESVNEGHPDKLCDQISDAVLDACLTQDPDSKVACETCTKTNMVMVFGEITxxxxxxxxxxxxxxxxxxxxxDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKKPEEIGAGDQGHMFGYATDETPELMPLTHVL

Protein Length: 170

Fln nts: GGCCAATGTCGACTATGAGCAGATCGTTCTAGTGCAGGTCTCGC_-_ATGCTGACTTGCGTACTGCTGCCCTTCCTCCTCTCCCGCTTCTCACTTCTGTCCCGGGAAACCCTGTTCCTCAGAATCGAGATGGAGACCTTCCTCTTCACATCCGAGTCTGTGAACGAGGGACACCCAGACAAGCTGTGTGACCAGATCTCTGATGCAGTGTTGGATGCATGCCTTACCCAGGACCCTGACAGCAAGGTAGCATGCGAGACCTGCACTAAAACGAACATGGTCATGGTTTTTGGTGAAATCACCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATGTGGGTCTTGATGCTGATCACTGCAAAGTGCTGGTTAATATTGAACAGCAGAGTCCTGACATTGCGCAGGGCGTTCATGGACACTTTACCAAAAAGCCCGAGGAGATTGGGGCCGGTGACCAGGGTCACATGTTTGGCTATGCAACTGATGAGACCCCTGAGCTGATGCCCCTGACCCATGTGCTGGC

Fln Alignment:

sp_v1.1_unigene90894___METFLFTSESVNEGHPDKLCDQISDAVLDACLTQDPDSKVACETCTKTNMVMVFGEITTMSxxxxxxxxxxxxxxxxxxSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKKPEEIGAGDQGHMFGYATDETPELMPLTHVL
C0PSM3_______________METFLFTSESVNEGHPDKLCDQISDAVLDACLTQDPDSKVACETCTKTNMVMVFGEITTKAxxxxxxxxxxxxxxxxxxSDDVGLDADHCKVLVNIEQQSPDIAQGVHGNFTKRPEEIGAGDQGHMFGYATDETPELMPLTHVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain