SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90879

Length: 1229 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene90879 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin alpha-2/alpha-4 chain n=118 Tax=Eukaryota RepID=TBA2_ARATH	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	alpha tubulin 1	-	-	94%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQU1

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 381 - 450

Fln protein: MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVRAVCMISNSTSVAEVFSRIDHKFDLMYA

Protein Length: 382

Fln nts: TTGATTTTTTTGTGCGCTTAACCGGGATTGTTTCCATTCTTTTGAGGGTTTTTTTCGAGGTTTGAAGGGTTTCAACCAGCGACA_-_ATGAGGGAGTGCATTTCGATCCACATTGGCCAGGCCGGTATTCAGGTCGGCAATGCCTGTTGGGAGCTTTACTGTCTCGAGCACGGCATCCAGCCTGATGGACAAATGCCGAGTGACAAGACCGTTGGCGGTGGAGATGATGCATTCAACACATTTTTCAGTGAGACAGGTGCCGGTAAGCATGTTCCTCGTGCCGTGTTTCTGGATCTGGAGCCAACTGTCATTGATGAAGTTCGAACCGGCACATATCGGCAGCTTTTTCACCCAGAGCAGCTGATCAGTGGCAAAGAAGATGCCGCCAACAACTTTGCTCGTGGCCATTATACCATTGGTAAGGAAATTGTGGATCTGTGCTTGGATCGAATCCGGAAGTTGGCAGACAACTGTACAGGCCTGCAAGGTTTCCTGGTCTTCCACGCTGTGGGAGGCGGTACCGGATCTGGTCTGGGGTCCCTTCTGTTGGAGAGGCTCTCTGTCGATTATGGAAAAAAATCGAAGTTGGGTTTCACTGTGTATCCATCTCCACAGGTCTCTACATCTGTAGTCGAGCCCTACAACAGCGTGCTGTCAACACACTCGCTGCTAGAGCATACAGATGTGGCCGTGCTGTTGGATAATGAGGCCATTTATGACATTTGTCGCCGTTCCCTGGACATCGAGCGTCCCACATACACTAACCTTAATAGACTTGTATCTCAGGTCATATCTTCCCTGACGAACGTTGATGTGACTGAGTTCCAAACAAACTTGGTGCCGTATCCTCGTATTCATTTCATGCTTTCCTCGTATGCTCCTGTGATCTCTGCTGAGAAGGCCTACCACGAGCAGCTGTCAGTAGCTGAGATCACCAACAGTGCCTTCGAGCCATCGTCCATGATGGCTAAATGTGATCCGCGCCATGGCAAATACATGGCTTGCTGTCTCATGTACCGAGGGGATGTTGTGCCCAAGGACGTGAACGCGGCAGTAGCCACCATTAAGACCAAGAGGACCATTCAGTTCGTGGATTGGTGTCCCACCGGGTTCAAGTGCGGTATCAATTATCAGCCTCCCACTGTGAGGGCCGTCTGTATGATTTCCAACTCGACCAGTGTAGCAGAGGTCTTCTCTCGTATTGATCATAAGTTCGATCTCATGTATGCCAA

Fln Alignment:

sp_v1.1_unigene90879___MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT---------NVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTV----------RAVCMISNSTSVAEVFSRIDHKFDLMYA
C0PQU1_______________MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain