SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90860

Length: 1126 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene90860 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os05g0230900 protein (Fragment) n=2 Tax=Oryza sativa Japonica Group RepID=Q0DJT2_ORYSJ	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	lactoylglutathione glyoxalase	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	93%
Blast2go	thylakoid lumen	GO:0031977	Cellular Component	93%
Blast2go	stromule	GO:0010319	Cellular Component	93%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	93%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRV0

Fln msg: your sequence is shorter than subject: 270 - 365

Fln protein: KKDKRRLLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEERYTNAFLGFGPEETNFVVELTYNYGVDSYKLGTGFGHFGIAVEDVYKAVDLIKAKGGKVTREPGPVKGGKTVIAFVEDPDGYKFELIERGPTPEPLCQVMLRVGDLDRAINFYEKAFGMELLKKRDNPDYKYTIAMMGYGPEDKSTVMELTYNYGVKNYDKGNAYGQIAISTDDVYKTAEAVRQAGGKITREPGPLPGINTKITACLDPDGWKAVFVDNADFLKELEL*

Protein Length: 271

Fln nts: CTAAAAAGGATAAACGCAGGCTACTGCATGTTGTCTATCGCGTTGGGGATTTAGACAAAACTATAAAATTTTATACTGAATGCTTGGGAATGAAGCTTCTTCGAAAGCGAGACATTCCTGAAGAAAGATACACAAATGCCTTTCTAGGATTTGGTCCAGAGGAGACTAATTTTGTGGTGGAGCTTACATACAATTATGGAGTAGACTCTTACAAATTGGGGACTGGTTTTGGTCACTTTGGTATTGCAGTTGAAGATGTCTATAAAGCAGTTGATCTTATTAAAGCCAAAGGAGGAAAGGTTACTAGAGAACCAGGGCCAGTTAAAGGAGGGAAAACTGTAATTGCCTTTGTAGAAGACCCAGATGGTTATAAATTTGAGTTGATAGAGAGAGGTCCTACTCCAGAGCCATTATGCCAAGTCATGCTGAGAGTAGGAGATCTTGATCGTGCAATTAATTTTTATGAAAAGGCTTTTGGAATGGAGCTATTGAAGAAACGAGATAATCCTGATTACAAGTATACAATAGCTATGATGGGATATGGACCAGAAGACAAAAGTACTGTTATGGAGCTGACTTACAATTATGGAGTGAAAAATTATGACAAAGGAAATGCTTATGGTCAGATTGCAATAAGTACAGATGATGTGTATAAGACAGCAGAAGCAGTTCGACAAGCTGGGGGCAAAATAACTCGTGAACCTGGTCCACTGCCTGGAATCAACACAAAGATTACAGCTTGCCTTGATCCCGATGGCTGGAAAGCGGTGTTTGTTGATAATGCTGATTTCCTGAAGGAGCTGGAGTTGTAA___AGCCAGTTGGGAAGAAGTTTGTTGGTAAAGTTTAATATTTACCTTAAAAACAAACATCTTACTATCGGCGCATCGCGAATTTTACAGAGTGAGTATAGTTGCCTTACTAGCAAGCCTACTAGCAAGCCTGAGATTGTGATGATGTTTACTCCATGGAGCTGATAGCAACCTGAATAACATGATGGCATCTTTTGTATATTCACCTTATCTCGTCTTCATTATTTTTCTGTAGTGCATTGTTTTAATAGTAAATAATTCATTTCCAGAAATATATGTTCCAGAAGGGACTTCTATAATCTTCTCTGACTTGAAGC

Fln Alignment:

sp_v1.1_unigene90860___KKDKRRLLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEERYTNAFLGFGPEETNFVVELTYNYGVDSYKLGTGFGHFGIAVEDVYKAVDLIKAKGGKVTREPGPVKGGKTVIAFVEDPDGYKFELIERGPTPEPLCQVMLRVGDLDRAINFYEKAFGMELLKKRDNPDYKYTIAMMGYGPEDKSTVMELTYNYGVKNYDKGNAYGQIAISTDDVYKTAEAVRQAGGKITREPGPLPGINTKITACLDPDGWKAVFVDNADFLKELEL
C0PRV0_______________KKDKRRLLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEERYTNAFLGFGPEETNFVVELTYNYGVDSYNLGTGFGHFGIAVEDVYKAVDLIKAKGGKVTREPGPVKGGKTVIAFVEDPDGYKFELIERGPTPDPLCQVMLRVGDLDRAINFYEKAFGMELLRKRDNPDYKYTVAMVGYGPEDKSTVLELTYNYGVKDYDKGNAYAQIAIGTDDVYKTAEAVRRAGGKITREPGPLPGISTKITACLDPDGWKAVFVDNADFLKELEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain