SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90856

Length: 542 nt

UniGene Fasta

>sp_v1.1_unigene90856
CATTACTAGTTGAAAATGTCGATAATTCCCAGCTTTTTTGGCCAGAGGTCATTCGATCCCTTCTCCTTGGATGTATGGGATCCTTTCCAAGCATTCACAGATTTGGCCAGCGGGGGACCATCGGGGCAATTTGTAAGGGAGACTTCTGCCATAGCCAATACTCAGAGCGCACATTTTCAAAGCTGATCTTCCAGGTTTGAAGAAAGAGGAGGTGAAAATAGAGTTGGAAGAGGGGCAAAGAGTTCTGCAGATAAGCGGGGAGCGCAGCAAAGAAGAAGAGCACAAGAACGACAAATGGCACCGCATTGAGCGATCCCGTGGAAAATTCCTTCGGCGTTTCCGGCTGCCGGAGAATGTGAAGGTGGAAGAGACCGCAACCCAAATCCATCGAGATCTCTGGCTGACCTCTCACGCGGTATGAGGATGTCATAGTAGACCTGCAGTGGCCGTAGAGGAAGGTTACATAATGTGTAGATGTGTGTAGGAAGCTGTTCTCCAGTTGATAGAATAAACATATCCATTCACTTCCCAGTTATTCCATC

Ace file of the UniGene sp_v1.1_unigene90856

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Low molecular weight heat-shock protein n=7 Tax=Pinaceae RepID=Q40935_PSEMZ	-	-	7.9874e-44	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	low molecular weight heat-shock protein	-	-	2.24208e-44	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTL9

Fln msg: Separated hits, possible frame ERROR between 165 and 167, and possible frame ERROR between 370 and 372, your sequence is shorter than subject: 131 - 160

Fln protein: MSIIPSFFGQRSFDPFSLDVWDPFQAFTDLASGGPSGQFVRETSAIANTxxAHIFKADLPGLKKEEVKIELEEGQRVLQISGERSKEEEHKNDKWHRIERSRGKFLRRFRLPENVKVExRPQPKSIEISG*

Protein Length: 132

Fln nts: CATTACTAGTTGAAA_-_ATGTCGATAATTCCCAGCTTTTTTGGCCAGAGGTCATTCGATCCCTTCTCCTTGGATGTATGGGATCCTTTCCAAGCATTCACAGATTTGGCCAGCGGGGGACCATCGGGGCAATTTGTAAGGGAGACTTCTGCCATAGCCAATACTCAxxxAGCGCACATTTTCAAAGCTGATCTTCCAGGTTTGAAGAAAGAGGAGGTGAAAATAGAGTTGGAAGAGGGGCAAAGAGTTCTGCAGATAAGCGGGGAGCGCAGCAAAGAAGAAGAGCACAAGAACGACAAATGGCACCGCATTGAGCGATCCCGTGGAAAATTCCTTCGGCGTTTCCGGCTGCCGGAGAATGTGAAGGTGGAAxxxAGACCGCAACCCAAATCCATCGAGATCTCTGGCTGA___CCTCTCACGCGGTATGAGGATGTCATAGTAGACCTGCAGTGGCCGTAGAGGAAGGTTACATAATGTGTAGATGTGTGTAGGAAGCTGTTCTCCAGTTGATAGAATAAACATATCCATTCACTTCCCAGTTATTCCATC

Fln Alignment:

sp_v1.1_unigene90856___MSIIPSFFGQ--RSFDPFSLDVWDPFQAFTDLASGGPSGQFVRETSAIANTQxAHIFKADLPGXXXXXXXXXXXXGQRVLQISGERSKEEEHKNDKWHRIERSRGKFLRRFRLPENVKVEExPQPKSIEISG
A9NTL9_______________MSIIPSFFGRSSRAFDPFSLDVWEPFQAFTDLAAGGPSEQFVKEASAVANTQxAHIFKADLPGLKKEDVKIELEEGQRILQISGERSKEEEHKNDKWHRIERSRGKFLRRFRLPENAKVEExPQPKSIEISG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain