SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90790

Length: 538 nt

UniGene Fasta

>sp_v1.1_unigene90790
TTCTCCTATCATGCAAGTCAATGTTGTACATACTACGCAAGCCCCCAAAGCATTTTGAAATGTTAGTTAAAGAGCATTTTAGAAAACGCGGTCATTATATTCTCCGTGCCTGTGATGCCTATCTGAAAGGGGCTCCAGTTGGATCGCTTTCAGAAGATTGTACGTTGCCGCCCAATGTTGGAGCAGGGTCTCAGACTCAGAATAGTAGTTCTGTTGGGTTCAAGCTTATGTTGATTAAAACTGTTCCCAAACTTATTTCAGCCTTCATGAAGCTGGAGTAGATTGCCAAGAATTTCAGCAGACAATAGCCAAAGAATCCAAGGGACTCTGAGAATTTTAGATGTGTGGTTATTTCTTTCAAATGATTTACATGGCGTTCAAGAGCTCATGTACAGTTGCAGAAGGTTTTAGATTGTGGATTATATTATACATTTACCACATTCTTGCTTATCTTATGTTTATGTTTAAATGTGATTACATATTATCGTGATTTTGGGAAAAAAAAAAAAACACAAAAAAAAAAAAAAAAAAAAAAAAC

Ace file of the UniGene sp_v1.1_unigene90790

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UBC23; UBC23 (UBIQUITIN-CONJUGATING ENZYME 23); small conjugating protein ligase/ ubiquitin-protein ligase; K10581 ubiquitin-conjugating enzyme E2 O [EC:6.3.2.19]	-	-	6.0e-23	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	protein	-	-	8.49077e-23	71%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	6.0e-23	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphate ion homeostasis	GO:0055062	Biological Process	8.49077e-23	71%
Blast2go	phosphate ion transport	GO:0006817	Biological Process	8.49077e-23	71%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	8.49077e-23	71%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2M6

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 21 aas, your sequence is shorter than subject: 87 - 108

Fln protein: MLYILRKPPKHFEMLVKEHFRKRGHYILRACDAYLKGAPVGSLSEDCTLPPNVGAGSQTQNSSSVGFKLMLIKTVPKLISAFMKLE*

Protein Length: 88

Fln nts: TTCTCCTATCATGCAAGTCA_-_ATGTTGTACATACTACGCAAGCCCCCAAAGCATTTTGAAATGTTAGTTAAAGAGCATTTTAGAAAACGCGGTCATTATATTCTCCGTGCCTGTGATGCCTATCTGAAAGGGGCTCCAGTTGGATCGCTTTCAGAAGATTGTACGTTGCCGCCCAATGTTGGAGCAGGGTCTCAGACTCAGAATAGTAGTTCTGTTGGGTTCAAGCTTATGTTGATTAAAACTGTTCCCAAACTTATTTCAGCCTTCATGAAGCTGGAGTAG___ATTGCCAAGAATTTCAGCAGACAATAGCCAAAGAATCCAAGGGACTCTGAGAATTTTAGATGTGTGGTTATTTCTTTCAAATGATTTACATGGCGTTCAAGAGCTCATGTACAGTTGCAGAAGGTTTTAGATTGTGGATTATATTATACATTTACCACATTCTTGCTTATCTTATGTTTATGTTTAAATGTGATTACATATTATCGTGATTTTGGGAAAAAAAAAAAAACACAAAAAAAAAAAAAAAAAAAAAAAAC

Fln Alignment:

sp_v1.1_unigene90790___PKHFEMLVKEHFRKRGHYILRACDAYLKGAPVGSLSEDCTLPPNVGAGSQTQNSSSVGFKLMLIKTVPKLISAFMKL
A9P2M6_______________PKHFESFVREHFHQRGHYILGACNAYMMGAQVGCLSGEAMM--GVHGRADTQSTSSIGFKIMLAKLIPKLVLAFKEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain