SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90746

Length: 527 nt

UniGene Fasta

>sp_v1.1_unigene90746
AGTAAGTACTGTAGAAGTGGAGAGAAAACAGTATAAGGCAACGGTGACGGGGTACGTGGATGCCAACAAGGTGCTGAAGAGAGTGAGGCAAACAGGGAAAAAGGCAGAATTGTGGCCTTACAAACCTTACCATCTGGTTTACTATCCATACACAGCTCAGGTTTATGACAAGAAGGCTCCCTCTGGCTATGTGAGGAACGTGGATCCCACCTTTCCCAGTTATCCCCATGATGGTAACAACGCCCCTGAAGCATACACTACGCTCTTCAGCGACGATAATACAAATGCTTGCACTGTTATGTAGCTGCCAGCTTTGTGCAGCCTGTATATTTGTATTTTGTGTTTAACAAAGCTGACAGCTTCTTGCCATCATTATCTGTAACTTTCAGTACACGGCGCTGTTAGTAGCTTGATGTACAGAGCGCTGGATAATAATGTGCGTTTTTCCGTATTGAAATGCTCTTGTGCGTGAGGCAGATTGTATCACTCGTTTATGTAAATATAAGTATTATTATGATGTCTTAAAC

Ace file of the UniGene sp_v1.1_unigene90746

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	metal ion binding protein, putative	-	-	2.0e-28	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	protein	-	-	7.26272e-32	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAT5

Fln msg: your sequence is shorter than subject: 101 - 146

Fln protein: VSTVEVERKQYKATVTGYVDANKVLKRVRQTGKKAELWPYKPYHLVYYPYTAQVYDKKAPSGYVRNVDPTFPSYPHDGNNAPEAYTTLFSDDNTNACTVM*

Protein Length: 102

Fln nts: AGTAAGTACTGTAGAAGTGGAGAGAAAACAGTATAAGGCAACGGTGACGGGGTACGTGGATGCCAACAAGGTGCTGAAGAGAGTGAGGCAAACAGGGAAAAAGGCAGAATTGTGGCCTTACAAACCTTACCATCTGGTTTACTATCCATACACAGCTCAGGTTTATGACAAGAAGGCTCCCTCTGGCTATGTGAGGAACGTGGATCCCACCTTTCCCAGTTATCCCCATGATGGTAACAACGCCCCTGAAGCATACACTACGCTCTTCAGCGACGATAATACAAATGCTTGCACTGTTATGTAG___CTGCCAGCTTTGTGCAGCCTGTATATTTGTATTTTGTGTTTAACAAAGCTGACAGCTTCTTGCCATCATTATCTGTAACTTTCAGTACACGGCGCTGTTAGTAGCTTGATGTACAGAGCGCTGGATAATAATGTGCGTTTTTCCGTATTGAAATGCTCTTGTGCGTGAGGCAGATTGTATCACTCGTTTATGTAAATATAAGTATTATTATGATGTCTTAAAC

Fln Alignment:

sp_v1.1_unigene90746___VSTVEVERKQYKATVTGYVDANKVLKRVRQTGKKAELWPYKPYHLVYYPYTAQVYDKKAPSGYVRNVDPTFPSYPHDGNNAPEAYTTLFSDDNTNACTVM
D5AAT5_______________VESVDVNRKEQKLTVTGYVDVNKVVNKVKGTGKRAELWPYVPYNLVYHPYSAQSYDKKAPSGYVRNVESTFLSPP---NRTDERYTTLFSEDNANSCTIM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain