SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90634

Length: 501 nt

UniGene Fasta

>sp_v1.1_unigene90634
GGCACATGGAAGGGTGGACGTGAGAAGGCTCCTGCTGCCTTTTGTAGGAAGACAATCACATCTACTGATAGGTTTGAAATGTGGGGAGATGGTGAGCAAACACGATCCTTTACATTCATTGATGAATGTGTGGAGGGTGTCCTGAGATTGACTAAATCAGACTTTAGAGAGCCAGTGAATATTGGTAGTGATGAAATGGTCAGCATGAACGAGATGGCTGAAATGGTGTCAAGCTTTGAGAATAAAAAGTTGCCGATACATCACATTCCTGGGCCAGAGGGTGTACGCGGTCGGAATTCTGACAATACATTGATTAAGGAAAAGCTAGGCTGGGCACCAACCATGAAGCTGAAGGTAAGGTTCCATACCTTCTTCAGGAATTATAATTTAGATTGTTAAACTCAAGCAACGAAATGGCCTTTGTTCGTTGCAGGAAAGATGCAGAGTCACATTTTTTTGCTTTGGTTTTAACAGGATGGCTTGAGGATTACTTATTTCTGG

Ace file of the UniGene sp_v1.1_unigene90634

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDP-mannose-3',5'-epimerase; K10046 GDP-D-mannose 3', 5'-epimerase [EC:5.1.3.18 5.1.3.-]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	gdp-d-mannose-3 -epimerase	-	-	75%

Source	ECs	Term	Type	e value	Identity
AutoFact	GDP-mannose 3,5-epimerase.	EC:5.1.3.18	-	0.0	71%

Source	KEGGs	Term	Type	Identity
AutoFact	Ascorbate and aldarate metabolism	00053		71%
AutoFact	Amino sugar and nucleotide sugar metabolism	00520		71%
AutoFact	Metabolic pathways	01100		71%
AutoFact	Biosynthesis of secondary metabolites	01110		71%
AutoFact	Isomerases, Racemases and epimerases, Acting on carbohydrates and derivatives.	EC:5.1.3.-	-	71%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Amino sugar and nucleotide sugar metabolism	00520		0.0	71%
AutoFact	Polyketide sugar unit biosynthesis	00523		0.0	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQV6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 42 aas, your sequence is shorter than subject: 157 - 312

Fln protein: GTWKGGREKAPAAFCRKTITSTDRFEMWGDGEQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVSSFENKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKVRFHTFFRNYNLDC*TQATKWPLFVAGKMQSHIFLLWF*

Protein Length: 158

Fln nts: GGCACATGGAAGGGTGGACGTGAGAAGGCTCCTGCTGCCTTTTGTAGGAAGACAATCACATCTACTGATAGGTTTGAAATGTGGGGAGATGGTGAGCAAACACGATCCTTTACATTCATTGATGAATGTGTGGAGGGTGTCCTGAGATTGACTAAATCAGACTTTAGAGAGCCAGTGAATATTGGTAGTGATGAAATGGTCAGCATGAACGAGATGGCTGAAATGGTGTCAAGCTTTGAGAATAAAAAGTTGCCGATACATCACATTCCTGGGCCAGAGGGTGTACGCGGTCGGAATTCTGACAATACATTGATTAAGGAAAAGCTAGGCTGGGCACCAACCATGAAGCTGAAGGTAAGGTTCCATACCTTCTTCAGGAATTATAATTTAGATTGTTAAACTCAAGCAACGAAATGGCCTTTGTTCGTTGCAGGAAAGATGCAGAGTCACATTTTTTTGCTTTGGTTTTAACAGGATGGCTTGAGGATTACTTATTTCTGG

Fln Alignment:

sp_v1.1_unigene90634___GTWKGGREKAPAAFCRKTITSTDRFEMWGDGEQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVSSFENKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKVRFHTFFRNYNLDC*TQATKWPLFVAGKMQSHIFLLWF*QDGLRITYFW
B8LQV6_______________GTWKGGREKAPAAFCRKTITSTDRFEMWGDGEQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVSSFENKKLPIHHIPGPEGVRGRNSENTLIKEKLGWAPTMKLK----------------------------------------DGLRITYFW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain