SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90567

Length: 272 nt

UniGene Fasta

>sp_v1.1_unigene90567
AGAGAATGTAGATTCCAGTACGGAAAATATCAAGGAAAAAAGGAATAGCGCAGAGCATGGTTGCAAAAAGTCGAATATTTCTTCTAGCAAGAAAAAGTTTAAGGTAGAATGGACAATGGACCTGCATCGGCGTTTTGTGCAAGCAGTGGAGCAACTTGGAGTTGATCAGGCAATCCCTTCAAGAATTTTGGACCTTATGAAAGTGGATGGCTTAACTCGGCATAATGTTGCTAGCCACTTACAGAAATATCGTTCTCACAGAAGGCACATTT

Ace file of the UniGene sp_v1.1_unigene90567

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor, putative	-	-	2.0e-20	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	dna binding	-	-	4.96775e-21	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRL2

Fln msg: Distance to subject end: 217 aas, your sequence is shorter than subject: 90 - 400

Fln protein: ENVDSSTENIKEKRNSAEHGCKKSNISSSKKKFKVEWTMDLHRRFVQAVEQLGVDQAIPSRILDLMKVDGLTRHNVASHLQKYRSHRRHI

Protein Length: 91

Fln nts: AGAGAATGTAGATTCCAGTACGGAAAATATCAAGGAAAAAAGGAATAGCGCAGAGCATGGTTGCAAAAAGTCGAATATTTCTTCTAGCAAGAAAAAGTTTAAGGTAGAATGGACAATGGACCTGCATCGGCGTTTTGTGCAAGCAGTGGAGCAACTTGGAGTTGATCAGGCAATCCCTTCAAGAATTTTGGACCTTATGAAAGTGGATGGCTTAACTCGGCATAATGTTGCTAGCCACTTACAGAAATATCGTTCTCACAGAAGGCACATTT

Fln Alignment:

sp_v1.1_unigene90567___VEWTMDLHRRFVQAVEQLGVDQAIPSRILDLMKVDGLTRHNVASHLQKYRSHRRHI
C0PRL2_______________VDWTQDLHRRFVQAVEQLGVEKAVPSRILELMGVNCLTRHNIASHLQKYRSHRKHL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain