SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90409

Length: 1411 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene90409 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chalcone synthase n=47 Tax=Pinaceae RepID=CHSY_PINSY	-	-	91%
FL-Next	tr=Chalcone synthase; Pinus pinaster (Maritime pine).	-	-	92%
Blast2go	chalcone synthase	-	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q7XJC5

Fln msg: Overlapping hits, possible frame ERROR between 1161 and 1079,

Fln protein: MAAGMMKDLEAFRKAQRADGPAIGTATPPNAVDQSSYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFELLWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEADWNQLFWIAHPGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTVETVVLKSVPLQ*

Protein Length: 385

Fln nts: TGTGCTGCTCTGCGTGGCTGCCGAGCAGTAAGTAGCAAAAGTCATAAAAACATT_-_ATGGCTGCAGGAATGATGAAGGATTTGGAGGCATTCAGGAAGGCTCAGAGGGCAGATGGCCCCGCTATCGGCACTGCCACTCCCCCCAATGCTGTTGACCAGAGCAGTTATCCTGATTACTACTTCAAAATCACCAACAGCGAGCATATGACAGAGCTGAAGGAGAAATTCAGGAGAATGTGCGACAAGTCGGCAATAAAGAAGAGATACATGTACTTGACGGAGGAGATTCTCCAGGAGAATCCCAACGTCTGCGAGTACATGGCGCCATCGCTGGACGCAAGGCAGGACATGGTTGTGGTGGAGGTGCCCAGGCTTGGAAAAGAAGCGGCTGCCAAGGCAATCAAAGAATGGGGTCAGCCCAAGTCGAAAATCACTCATGTCATTTTCTGCACTACCAGTGGAGTCGACATGCCCGGAGCCGACTATCAGCTGACAAAGCTTCTTGGCCTCCGCCCCAGCGTTAAGAGAGTCATGATGTACCAACAGGGCTGCTTCGCTGGAGGCACCGTTCTCCGCGTTGCTAAAGATCTGGCTGAGAACAATCGGGGAGCTCGGGTTCTGGTCGTCTGCAGTGAAATCACGGCTGTCACATTCCGTGGCCCGTCCGACACTCACCTCGACAGTATGGTCGGCCAAGCTCTCTTCGGCGACGGTGCGGCCGCCCTCATCGTCGGAGCTGATCCCGTTCCTGAGGTGGAGAAGCCCTGTTTCGAGCTGCTGTGGACTGCACAGACAATTCTTCCCGACAGCGACGGAGCAATCGACGGGCACTTGAGAGAGGTCGGACTTACCTTCCACCTTCTCAAGGACGTTCCAGGGCTTATCTCCAAGAACATCGAAAAGAGTCTGGTTGAGGCGGACTGGAACCAATTATTCTGGATCGCCCATCCCGGAGGACCGGCCATTCTGGATCAGGTGGAGGCGAAGTTGAATCTGGATCCCAAGAAACTGAGGGCGACGAGGCAAGTGCTGAGCGACTACGGAAACATGTCAAGCGCGTGCGTGCACTTCATCTTGGACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACTGTAGAAACAGTCGTCCTGAAGAGCGTTCCCCTGCAGTGA___TTGAGCAAAGCCGGTCTCACAAATAAAACGTGCTGTTTGCTACCGTAAATATGTGTTATGCAAGTTTCGCAGAATTCATAGCGAAGCCAGAATATTTGATTTTTAACAGATTTCAGCCCTGGCTGCTCAGGGTGTATGTAATGCATTGTGAAGCTTTCCTTGAATTTGCATATAGTGCTTAATTTCCCCAGCTTCTCATTATGTCAC

Fln Alignment:

sp_v1.1_unigene90409___MAAGMMKDLEAFRKAQRADGPA----IGTATPPNAVDQSSYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFELLWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEA-------DWNQLFWIAHPGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDEMxxxxxxxxxxxxxxxxxxxxxxxxxxGLTVETVVLKSVPLQ
Q7XJC5_______________MAAGMMKDLEAFRKAQRADGPATILAIGTATPPNAVDQSSYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFELLWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDEMxxxxxxxxxxxxxxxxxxxxxxxxxxGLTVETVVLKSVPLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain