SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90401

Length: 1216 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene90401

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S290_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	nucleic acid binding	-	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNT1

Fln msg:

Fln protein: MNYTVQVMNLSPNATEEIVRDFFSHSGTVESVELERTGEEAQVAFVTFKEPYAVETAVLLSGATIIDQRVCIVNWGGSDQSFDLWNNPSWRLEHEFEDPEASYFVRTPGGAVTTAQEVVTSMLSKGYVLGKDALSKAKSFDEAHQVSASAAAKVVSLGKRIGINDKISAGAEAVRAIEDNYHVSEKTKLALSVAQQTVSNAGTAVVNSRYFSAGALWVSGVLSKAAQAAADLGSKGTT*

Protein Length: 240

Fln nts: CTTGCGCGAGTCGAAACAATTTCCCATAAAGAAAAGCGTGGTCGGCGGTACTCATCTCCAAGATGTCATCGATCACTTATTGAAATCCGCACCATACAGGGACAAGCAATACTTGAGGGTCGTGAGCTCGTCGGCC_-_ATGAATTACACCGTGCAAGTGATGAATTTATCTCCAAATGCAACCGAGGAGATTGTCAGAGATTTCTTCTCCCACTCTGGAACTGTCGAAAGCGTTGAATTGGAGAGAACTGGAGAGGAGGCTCAGGTTGCTTTTGTCACTTTCAAGGAGCCCTATGCTGTGGAAACTGCTGTTCTGTTGAGCGGAGCAACCATAATAGACCAGAGAGTGTGCATAGTCAATTGGGGGGGCAGTGATCAGTCTTTTGACCTTTGGAATAATCCATCATGGAGGCTTGAACATGAGTTTGAGGACCCTGAGGCTAGTTATTTTGTGCGGACTCCCGGTGGGGCAGTAACCACGGCCCAGGAAGTAGTTACTTCGATGCTATCCAAGGGGTATGTTTTGGGGAAAGATGCATTGAGCAAGGCAAAATCCTTTGACGAGGCTCATCAAGTCTCGGCGAGTGCTGCTGCTAAGGTGGTATCTTTGGGCAAGAGAATTGGTATAAATGATAAAATCAGTGCTGGTGCAGAAGCTGTTAGAGCTATTGAAGACAATTATCATGTCTCAGAGAAGACCAAGTTAGCGCTGTCAGTAGCCCAGCAAACCGTGAGCAATGCAGGAACAGCAGTTGTCAATAGCAGGTACTTTTCCGCAGGAGCCTTGTGGGTTTCCGGAGTTCTGAGCAAAGCTGCCCAAGCTGCTGCTGATTTGGGCAGTAAAGGCACTACATAG___GAAAAAGGTATTTGACAATAAATGCTTCTTACCGGCAAGATTGAGATTATGTGATCATGCAGTATATAATATGTATTTATGTGCATGATTGTATCTATAGGTTATCTAGCAGGGTGCGCTTAGAGTACTATTTCTTGGTAAGGATGAACAGCGAAACATTCACCCTATTTAGTGCTATTATATGAGCCAATTCCTTAGCCACAAAAGTTTTGATCATCCTTATCAAGAACCAAATTAGTATGAATGGCTGTGATTCACTCGGCAGGCTGGCAGTTAGTAAAGTACTTTTTATGTCTTTTTATTCGTTATTGTAAAATGTTTGAGCATCTTAATAAGTAGGAAATGAAGGAGGAATCTTTTTCT

Fln Alignment:

sp_v1.1_unigene90401___NYTVQVMNLSPNATEEIVRDFFSHSGTVESVELERTGEEAQVAFVTFKEPYAVETAVLLSGATIIDQRVCIVNWGGSDQSFDLWNNPSWRLEHEFEDPEASYFVRTPGGAVTTAQEVVTSMLSKGYVLGKDALSKAKSFDEAHQXXXXXXXXXXXLGKRIGINDKISAGAEAVRAIEDNYHVSEKTKLALSVAQQTVSNAGTAVVNSRYFSAGALWVSGVLSKAAQAAADLGSKGTT
B8LNT1_______________SYTVQVMNLSPNATEQHVRDFFSHSGTIESVELERAGEEAQVAFVTFKEPYAVETAVLMSGATIVDQRVCIVSWGGSEQSFDLWNSPSWRLEHEYEDPEASYFVRTPGGAATTAQEVVTSMLSKGYVLGKDALSKAKSFDETHQVTASAAAKVASLGKRIGINDKISAGAEAVRAVENKYHVSEKTKSMLLVAEQTVSTAGTAVVNSRYFTAGALWVSGVLEKAAQAAADLGSKGTT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain