SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90262

Length: 504 nt

UniGene Fasta

>sp_v1.1_unigene90262
TTGGATATAGAAGAGCTCCTGGAGTTGAAACTGCAACCGGTTTCGGATTGTGTTACAATGTGTCTGGTGTAGAGAATATTCAGTTGCCTAAATTTGCATTTCATTTCAAGGGTGGCTCAGATATGGTACTGCCTGTTGCCAACTATTTGACATATTTTAGCAGTTTTGATTCGACCTGCTTGACGATGATCAGCAGCAAAGGGATCTTGGACGATGATTTTGGCCCTGCTGTGATCCTGGGAAATTATCAGCAGCAGGACTTTTATATATTGTACGACAGAGAGAAGAATCGTTTAGGGTTCACTCAACAAACTTGCCAGACATCCGGCTGAACAAATGAACATGTCATTTTGCCGCAGGTTAAGTTATTGTCAGATAATGCAGGTTGAATAAATAAATTACATTCTGTCGGATTCTTGGCCGGAGTAATGAAACTGCACAGCGTGCCCTTTGCTAGTATTTAAATTGTAAGTTTGATTATTAATGAATTCCACCCAATCCCTG

Ace file of the UniGene sp_v1.1_unigene90262

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartic protease n=1 Tax=Fagopyrum esculentum RepID=Q6QJL5_FAGES	-	-	4.0e-20	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	aspartyl protease family protein	-	-	2.52234e-44	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	2.52234e-44	63%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	2.52234e-44	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC09

Fln msg: your sequence is shorter than subject: 110 - 370

Fln protein: GYRRAPGVETATGFGLCYNVSGVENIQLPKFAFHFKGGSDMVLPVANYLTYFSSFDSTCLTMISSKGILDDDFGPAVILGNYQQQDFYILYDREKNRLGFTQQTCQTSG*

Protein Length: 111

Fln nts: TTGGATATAGAAGAGCTCCTGGAGTTGAAACTGCAACCGGTTTCGGATTGTGTTACAATGTGTCTGGTGTAGAGAATATTCAGTTGCCTAAATTTGCATTTCATTTCAAGGGTGGCTCAGATATGGTACTGCCTGTTGCCAACTATTTGACATATTTTAGCAGTTTTGATTCGACCTGCTTGACGATGATCAGCAGCAAAGGGATCTTGGACGATGATTTTGGCCCTGCTGTGATCCTGGGAAATTATCAGCAGCAGGACTTTTATATATTGTACGACAGAGAGAAGAATCGTTTAGGGTTCACTCAACAAACTTGCCAGACATCCGGCTGA___ACAAATGAACATGTCATTTTGCCGCAGGTTAAGTTATTGTCAGATAATGCAGGTTGAATAAATAAATTACATTCTGTCGGATTCTTGGCCGGAGTAATGAAACTGCACAGCGTGCCCTTTGCTAGTATTTAAATTGTAAGTTTGATTATTAATGAATTCCACCCAATCCCTG

Fln Alignment:

sp_v1.1_unigene90262___GYRRAPGVETATGFGLCYNVSGVENIQLPKFAFHFKGGSDMVLPVANYLTYFSSFDSTCLTMISSKGILDDDFGPAVILGNYQQQDFYILYDREKNRLGFTQQTCQT
D5AC09_______________GYRRAGEVEDKTGMGLCYDVTGLENIVLPEFAFHFKGGSDMVLPVANYFSYFSSFDSICLTMISSRGLLEVDSGPAVILGNDQQQDFYLLYDREKNRLGFTQQTCKT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain