SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90259

Length: 517 nt

UniGene Fasta

>sp_v1.1_unigene90259
GAATTCGACTCATTTGAAGACGTTATGAAGCTTACTCCGATGGGATCAAGCTGTCGAGAATCCAATTCTCGACGCTGCGAAGAATCTCATTCCTCTTGAGCTCATCAGGGAGTTCCTCACGACAGATGGCCAAAAATTGCTGAAGTATCCCCTTCCTCAGGTTATTTCCAATGACAAATTTGCATGGAGGAAAGACGAAGAGTTTGCGCGGCAGACGTTGGCTGGTGTCGATCCGGTTGTTATACAGAGACTCAAAAGTTTTCCCCCAAGAAGTAAACTGGACCCGGGGACGTATGGTCCTCAGATCAGTTCTATTACTTCTTCACATATAGAAAAGAATATCGATGGGCTAACAGTGGAGCAGGCTCTAGAGGACAACAAGTTGTTCATTCTGGACCATCATGATGTCTTCATGCCTTATGTTAACCGAATAAATGCTCTGTCTAGAAAGATATATGCATCTCGCACAATTCTCTTCCTTAACAAGAATGGCACATTAAGGCCAGTTGCAATCGAG

Ace file of the UniGene sp_v1.1_unigene90259

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase (Fragment) n=1 Tax=Vitis vinifera RepID=D7U235_VITVI	-	-	61%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	lipoxygenase	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lipoxygenase.	EC:1.13.11.12	-	0.0	76%

Source	KEGGs	Term	Identity
Blast2go	Linoleic acid metabolism	00591	76%
Blast2go	alpha-Linolenic acid metabolism	00592	76%
Blast2go	Biosynthesis of plant hormones	01070	76%
Blast2go	Metabolic pathways	01100	76%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	76%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	76%
Blast2go	metabolic process	GO:0008152	Biological Process	76%
Blast2go	lateral root primordium development	GO:0010386	Biological Process	76%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	76%
Blast2go	lipoxygenase activity	GO:0016165	Molecular Function	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT31

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 388 aas, your sequence is shorter than subject: 172 - 924

Fln protein: NSTHLKTL*SLLRWDQAVENPILDAAKNLIPLELIREFLTTDGQKLLKYPLPQVISNDKFAWRKDEEFARQTLAGVDPVVIQRLKSFPPRSKLDPGTYGPQISSITSSHIEKNIDGLTVEQALEDNKLFILDHHDVFMPYVNRINALSRKIYASRTILFLNKNGTLRPVAIE

Protein Length: 173

Fln nts: GAATTCGACTCATTTGAAGACGTTATGAAGCTTACTCCGATGGGATCAAGCTGTCGAGAATCCAATTCTCGACGCTGCGAAGAATCTCATTCCTCTTGAGCTCATCAGGGAGTTCCTCACGACAGATGGCCAAAAATTGCTGAAGTATCCCCTTCCTCAGGTTATTTCCAATGACAAATTTGCATGGAGGAAAGACGAAGAGTTTGCGCGGCAGACGTTGGCTGGTGTCGATCCGGTTGTTATACAGAGACTCAAAAGTTTTCCCCCAAGAAGTAAACTGGACCCGGGGACGTATGGTCCTCAGATCAGTTCTATTACTTCTTCACATATAGAAAAGAATATCGATGGGCTAACAGTGGAGCAGGCTCTAGAGGACAACAAGTTGTTCATTCTGGACCATCATGATGTCTTCATGCCTTATGTTAACCGAATAAATGCTCTGTCTAGAAAGATATATGCATCTCGCACAATTCTCTTCCTTAACAAGAATGGCACATTAAGGCCAGTTGCAATCGAG

Fln Alignment:

sp_v1.1_unigene90259___LDAAKNLIPLELIREFLTTDGQKLLKYPLPQVISNDKFAWRKDEEFARQTLAGVDPVVIQRLKSFPPRSKLDPGTYGPQISSITSSHIEKNIDGLTVEQALEDNKLFILDHHDVFMPYVNRINAL-SRKIYASRTILFLNKNGTLRPVAIE
C0PT31_______________LDIFKNLMLPKIMKNMLKT-GEELLRYEIPSIISRDRFAWLRDNEFGRQTLAGVNPVSIERLKEFPIFSKLDPAIYGSPESAIKSEHVEGELNGMSVEQALEEERLFILDYYDAYMPFVTKINSLKGRKVYASRTIFFLTTAGTLKPIVIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain