SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90238

Length: 535 nt

UniGene Fasta

>sp_v1.1_unigene90238
CATTGTCTTCTATTTGTCCTTCCGAGGAATGTTGAAATTCTCAGAAAGACCACTCTTCGGGGATGTTATTACACTTGATATAGCAAGATATGGTAGGCCACAATTAGGATTATCTGCAGAAATAAGATGGATATCTCAGTCCACAAATACTTCATCTATTGCAACAGCGAGTCAGCCTGCTACAGATAGTCCGAAAGAGAACAATGGAGACCAGACTTTAAAGCAGAAAAAGGCAGAAGCATCACCGGAAGAATGCGACCAGGCTGTAGAAGGTCTGAGTACAGTGAAAGCCAAGGCCAAGCAGGCACAGGAATCACGCAGGAAAGATGAAACTGTTGTTAGAAAGTTCTGGTCTTTATTTATGGGAATTGGACCTGCACTAAGGGCTATTGCTTCTATGAGCAGGGAAGATTGGGCCAGGAACTTCATCAGTGGAAACATCATTTCTTGGAAGCATTGCAACATTATTGGGTTGGAACTAAACTTCTTTGGGCCGACATTAGGATATCTTTCAGGCTTCTACTGAAGCTTGCGA

Ace file of the UniGene sp_v1.1_unigene90238

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LETM1 domain containing protein	-	-	3.0e-07	41%
FL-Next	tr=Os02g0608400 protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	54%
Blast2go	leucine zipper-ef-hand containing transmembrane	-	-	2.01522e-39	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	2.01522e-39	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q6K1Y0

Fln msg: Separated hits, possible frame ERROR between 418 and 421, Distance to subject end: 524 aas, your sequence is shorter than subject: 178 - 767

Fln protein: IVFYLSFRGMLKFSERPLFGDVITLDIARYGRPQLGLSAEIRWISQSTNTSSIATASQPATDSPKENNGDQTLKQKKAEASPEECDQAVEGLSTVKAKAKQAQESRRKDETVVRKFWSLFMGIGPALRAIASMSREDWxxELHQWKHHFLEALQHYWVGTKLLWADIRISFRLLLKLA

Protein Length: 179

Fln nts: CATTGTCTTCTATTTGTCCTTCCGAGGAATGTTGAAATTCTCAGAAAGACCACTCTTCGGGGATGTTATTACACTTGATATAGCAAGATATGGTAGGCCACAATTAGGATTATCTGCAGAAATAAGATGGATATCTCAGTCCACAAATACTTCATCTATTGCAACAGCGAGTCAGCCTGCTACAGATAGTCCGAAAGAGAACAATGGAGACCAGACTTTAAAGCAGAAAAAGGCAGAAGCATCACCGGAAGAATGCGACCAGGCTGTAGAAGGTCTGAGTACAGTGAAAGCCAAGGCCAAGCAGGCACAGGAATCACGCAGGAAAGATGAAACTGTTGTTAGAAAGTTCTGGTCTTTATTTATGGGAATTGGACCTGCACTAAGGGCTATTGCTTCTATGAGCAGGGAAGATTGGGCxxxGGAACTTCATCAGTGGAAACATCATTTCTTGGAAGCATTGCAACATTATTGGGTTGGAACTAAACTTCTTTGGGCCGACATTAGGATATCTTTCAGGCTTCTACTGAAGCTTGCGA

Fln Alignment:

sp_v1.1_unigene90238___RPLFGDVITLDIARYGRPQLGLSAEIRWISQSTNTSSIATASQPATDSPKENNGDQTLKQKKAEASPEECDQAVEGLST--VKAKAKQAQESRRKDETVVRKFWSLFMGIGPALRAIASMSREDWAxELHQWKHHFLEALQHYWVGTKLLWADIRISFRLLLKLA
Q6K1Y0_______________RPAHG--ISLPAYGIGRKEFGLPMGARHLLQSVRTASTATAGQPKLDIEDEQSEDQKQNKRKKEASPEECDQAVEGLSSAKAKAKAKQVQESVKAGQSIVRKFWARLLGIGPALRAVASMSRADWAxKLKHWKDEFVSTLQHYWLGTKLLWADVRISSRLLVKLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain