SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90212

Length: 433 nt

UniGene Fasta

>sp_v1.1_unigene90212
GCTTGCAAGTGGGCTTACAAAGACGCTGAGGAAGACAGTGTTTTGGAAGATGACTATTTCCTCTCTCGCTTGCCCATTCTTGAGAGACAACTTGCAAAAGGAGGTGTGAGGTTGGCTGCAACACTCAACCGTATATTCAGTTCAAAAAAAGACCACACTCGGGATTCAGAACTCTAGAAGCAACAGGACTGGGTTGTCTGCTACAACAGTCTTGTAAACTTAGATCAGGAACACTACCACTGTGAAAACTATCATCGTGACCATTGCACCGCAGCATCTTGGTTCCTCTGTGTATCAAGAAATAAACTGTACCCTAATTTTATAGGAATAATCATAACCTCTGTTACCATACCCATTTCAATGTTTTCCTAATTTTCCTTTAATGTAAATTGCCACGTACTTGAATTCCTTTAACCTTTGCCTGGACCTCCAT

Ace file of the UniGene sp_v1.1_unigene90212

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ENDO4; ENDO4 (endonuclease 4); T/G mismatch-specific endonuclease/ endonuclease/ nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease	-	-	2.0e-13	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	endo4 (endonuclease 4) t g mismatch-specific endonuclease endonuclease nucleic acid binding single-stranded dna specific endodeoxyribonuclease	-	-	2.90249e-21	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	single-stranded DNA specific endodeoxyribonuclease activity	GO:0000014	Molecular Function	2.90249e-21	87%
Blast2go	T/G mismatch-specific endonuclease activity	GO:0043765	Molecular Function	2.90249e-21	87%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACJ2

Fln msg: your sequence is shorter than subject: 59 - 229

Fln protein: ACKWAYKDAEEDSVLEDDYFLSRLPILERQLAKGGVRLAATLNRIFSSKKDHTRDSEL*

Protein Length: 60

Fln nts: GCTTGCAAGTGGGCTTACAAAGACGCTGAGGAAGACAGTGTTTTGGAAGATGACTATTTCCTCTCTCGCTTGCCCATTCTTGAGAGACAACTTGCAAAAGGAGGTGTGAGGTTGGCTGCAACACTCAACCGTATATTCAGTTCAAAAAAAGACCACACTCGGGATTCAGAACTCTAG___AAGCAACAGGACTGGGTTGTCTGCTACAACAGTCTTGTAAACTTAGATCAGGAACACTACCACTGTGAAAACTATCATCGTGACCATTGCACCGCAGCATCTTGGTTCCTCTGTGTATCAAGAAATAAACTGTACCCTAATTTTATAGGAATAATCATAACCTCTGTTACCATACCCATTTCAATGTTTTCCTAATTTTCCTTTAATGTAAATTGCCACGTACTTGAATTCCTTTAACCTTTGCCTGGACCTCCAT

Fln Alignment:

sp_v1.1_unigene90212___ACKWAYKDAEEDSVLEDDYFLSRLPILERQLAKGGVRLAATLNRIFSSKKDHTRDSEL
D5ACJ2_______________ACKWAYKDAKENSVLEDDYFLSRLPILEKQLARGGVRLAATLNRIFSSKEGYTRESEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain