SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90102

Length: 323 nt

UniGene Fasta

>sp_v1.1_unigene90102
GGAATCAATCATAGATTACAGTGGAAGGAACACTCCATGATCTTTGCTCTCCCAAACAAACCTGGACAGTTTAGCCGTTTTGATTTCATGGAGGTTCTTCCAGCACCCTTGAACGGAATTTGGGCAATCCTAAAGAACAATGAGATGTTGACTTGGTCAGAGAAATTACGCTTTGCAGTTGGACTTTTGCCAGCTATAGTTGGGGGTCAAGCTTATGTTGAAGCCCAAGATGGCTTAACTGTCAAAGAGTGGATGCATAAGCAGGGTGTACCAGATCGAGTCAGCGATGAAGTATTTGTAGCAATGTCAAAAGCTTTAAATTT

Ace file of the UniGene sp_v1.1_unigene90102

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phytoene desaturase (Fragment) n=1 Tax=Lilium longiflorum RepID=Q6RFR0_LILLO	-	-	87%
FL-Next	sp=Phytoene dehydrogenase, chloroplastic/chromoplastic; Narcissus pseudonarcissus (Daffodil).	-	-	86%
Blast2go	phytoene desaturase	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	carotene biosynthetic process	GO:0016120	Biological Process	95%
Blast2go	phytoene dehydrogenase activity	GO:0016166	Molecular Function	95%
Blast2go	chloroplast	GO:0009507	Cellular Component	95%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q40406

Fln msg: Distance to subject end: 294 aas, your sequence is shorter than subject: 107 - 570

Fln protein: GINHRLQWKEHSMIFALPNKPGQFSRFDFMEVLPAPLNGIWAILKNNEMLTWSEKLRFAVGLLPAIVGGQAYVEAQDGLTVKEWMHKQGVPDRVSDEVFVAMSKALN

Protein Length: 108

Fln nts: GGAATCAATCATAGATTACAGTGGAAGGAACACTCCATGATCTTTGCTCTCCCAAACAAACCTGGACAGTTTAGCCGTTTTGATTTCATGGAGGTTCTTCCAGCACCCTTGAACGGAATTTGGGCAATCCTAAAGAACAATGAGATGTTGACTTGGTCAGAGAAATTACGCTTTGCAGTTGGACTTTTGCCAGCTATAGTTGGGGGTCAAGCTTATGTTGAAGCCCAAGATGGCTTAACTGTCAAAGAGTGGATGCATAAGCAGGGTGTACCAGATCGAGTCAGCGATGAAGTATTTGTAGCAATGTCAAAAGCTTTAAATTT

Fln Alignment:

sp_v1.1_unigene90102___GINHRLQWKEHSMIFALPNKPGQFSRFDFMEVLPAPLNGIWAILKNNEMLTWSEKLRFAVGLLPAIVGGQAYVEAQDGLTVKEWMHKQGVPDRVSDEVFVAMSKALN
Q40406_______________GINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKVRFAIGLLPAMVGGQAYVEAQDGLTVTEWMRRQGVPDRVNDEVFIAMSKALN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain