SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90075

Length: 828 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene90075

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase-like protein D2 n=2 Tax=Arabidopsis RepID=CSLD2_ARATH	-	-	79%
FL-Next	tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine).	-	-	45%
Blast2go	cellulose synthase-like protein	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	94%
Blast2go	response to cold	GO:0009409	Biological Process	94%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	94%
Blast2go	integral to Golgi membrane	GO:0030173	Cellular Component	94%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	94%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q5DI95

Fln msg: Overlapping hits, possible frame ERROR between 322 and 319, Distance to subject end: 112 aas, your sequence is shorter than subject: 276 - 984

Fln protein: ESALIPKKFGNSTLLADSIPVAEFQGRPLADHPGVKNGRPPGALTAPREPLDASTVAEAVSVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVxxxDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALFATSRMKILQRVAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVQTLSISFLVYLLIITITLALLAVLEVKWSGIELEEWWRNEQFWLIGGTSAHPAAVVQGLLKVIAGIDISFTLTSKSAGEDIDDEFAD

Protein Length: 277

Fln nts: GGAATCAGCTCTTATCCCTAAGAAGTTTGGCAACTCCACCCTTCTGGCAGATTCCATTCCTGTTGCAGAGTTTCAGGGTCGACCCTTGGCAGACCACCCTGGCGTAAAGAATGGACGACCACCAGGTGCTCTGACGGCTCCTCGTGAGCCTCTTGATGCTTCCACTGTTGCAGAAGCTGTAAGTGTGATTTCTTGCTGGTATGAGGACAAGACAGAGTGGGGACAAAGAGTAGGCTGGATTTATGGTTCTGTTACAGAGGATGTGGTCACCGGATACCGGATGCACAACAGGGGATGGAAGTCTGTATATTGTGTGxxxxxxxxxGATGCTTTCAGAGGGACAGCTCCAATAAACTTGACAGACAGATTACACCAGGTCCTGAGATGGGCAACTGGCTCTGTGGAAATCTTTTTCTCTCGGAACAACGCATTGTTCGCAACCTCAAGAATGAAAATTCTACAGCGCGTAGCTTATCTGAATGTGGGGATCTATCCCTTCACATCTGTGTTCCTCATAGTGTACTGCTTCCTTCCAGCACTTTCCCTTTTCTCTGGTCAATTCATTGTGCAGACCCTCTCGATATCTTTCCTGGTATACCTTCTTATAATTACCATAACACTTGCTCTCCTAGCCGTTCTGGAGGTCAAGTGGTCTGGTATTGAACTGGAAGAATGGTGGAGAAATGAGCAGTTCTGGTTGATTGGAGGCACCAGTGCCCACCCTGCAGCTGTTGTACAGGGCCTGTTGAAGGTCATAGCAGGAATAGACATATCTTTCACACTGACATCCAAGTCTGCTGGTGAAGACATTGATGATGAATTTGCAGAT

Fln Alignment:

sp_v1.1_unigene90075___KKFGNSTLLADSIPVAEFQGRPLADHPGVKNGRPPGALTAPREPLDASTVAEAVSVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTxRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAL---FATSRMKILQRVAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVQTLSISFXXXXXXXXXXXXXXXXXEVKWSGIELEEWWRNEQFWLIGGTSAHPAAVVQGLLKVIAGIDISFTLTSKSAGEDIDDEFAD
Q5DI95_______________KSFGQSSV---------FIASTLMDNGGVPESTNP-----------ASLIKEAIHVISCGYEEKTEWGKEVGWIYGSVTEDILTGFKMHCRGWRSIYCMPxRPAFKGSAPINLSDRLHQVLRWALGSIEILFSRHCPLWYGFGAGRLKWLERLAYTNTIVYPLTSLPLIAYCTLPAICLLTGEFIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASD---DNEFGE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain