SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene90051

Length: 420 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene90051
CTACAAGCTTGTCCTACAGGGAGAACAGCTGCTTGTCGATGCGCCTGAGATGATAGAAAAGGCCCTGTCGACAGAGCAGGATCTATCCGCCAAAAGAAATGCGTTCTTGATGCTGTTCAATTGTTCCCAGGAGCGTGCGATCGGTTACCTACTACGGAATCTCGACGCTGTGCCAAACTGGGGAGATTTACTCCAGATGGTTGTTCTGGAGCTGATCCGGAAGGTCTGCCGATCTAACCCAACGGAGAAGGGGAAATACATCAAGATCATTATTTCGTTGATGAATTCGTCATCGACTGCGGTCATGTATGAGTGTGCCGCAACTTTGGTGAGTCTATCTTCAGCGCCAACTGCTATCCGGGCTGCGGCGAACACCTACTGTCAGCTCTTGCAATCGCAGAGCGACAACAATGTGAAGCT

Ace file of the UniGene sp_v1.1_unigene90051 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Coatomer subunit beta, putative	-	-	81%
FL-Next	sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PR52

Fln msg: Distance to subject end: 651 aas, your sequence is shorter than subject: 139 - 948

Fln protein: YKLVLQGEQLLVDAPEMIEKALSTEQDLSAKRNAFLMLFNCSQERAIGYLLRNLDAVPNWGDLLQMVVLELIRKVCRSNPTEKGKYIKIIISLMNSSSTAVMYECAATLVSLSSAPTAIRAAANTYCQLLQSQSDNNVK

Protein Length: 140

Fln nts: CTACAAGCTTGTCCTACAGGGAGAACAGCTGCTTGTCGATGCGCCTGAGATGATAGAAAAGGCCCTGTCGACAGAGCAGGATCTATCCGCCAAAAGAAATGCGTTCTTGATGCTGTTCAATTGTTCCCAGGAGCGTGCGATCGGTTACCTACTACGGAATCTCGACGCTGTGCCAAACTGGGGAGATTTACTCCAGATGGTTGTTCTGGAGCTGATCCGGAAGGTCTGCCGATCTAACCCAACGGAGAAGGGGAAATACATCAAGATCATTATTTCGTTGATGAATTCGTCATCGACTGCGGTCATGTATGAGTGTGCCGCAACTTTGGTGAGTCTATCTTCAGCGCCAACTGCTATCCGGGCTGCGGCGAACACCTACTGTCAGCTCTTGCAATCGCAGAGCGACAACAATGTGAAGCT

Fln Alignment:

sp_v1.1_unigene90051___YKLVLQGEQLLVDAPEMIEKALSTEQDLSAKRNAFLMLFNCSQERAIGYLLRNLDAVPNWGDLLQMVVLELIRKVCRSNPTEKGKYIKIIISLMNSSSTAVMYECAATLVSLSSAPTAIRAAANTYCQLLQSQSDNNVK
C0PR52_______________YKLP-QGEQLLVDAPEMIEKVLATEQDLSAKRNAFLMLFNCAQERAIGYLIRNLDAVPKWGDLLQMVVLELIRKVCRSNPAEKGKYIKIIISLLNSSSTAVMYECAATLVSLSSAPTAIRAAANTYCQLLLSQSDNNVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain