SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89885

Length: 506 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene89885
GGCAGCTCATGTACTTCGTGGTGGGATCATCCCGCCTACACCTCACTTACCGCAAAGCAGAGCATGCAACTCAAGTGGGTACACGACAAATACATGATTTACGATTACTGCAAAGATTCAGTTAGATTTGCTACACCTCCAGCAGAGTGTACTGCATGATGTGGGCTCTTTTAACTTGACTTTCTACCGATTCCATGATCTTAATCACAAATATTTGTTCCACTTGTATTAGTTTTAGTAGAGCCCTGTGCATTCCTGATAGCTTGGATGTTGAAATCTCTTTATATGGATATGATAACCGTTAACTACGGTAGTTAGTTCATCTGATCACGCCAAAGTTTATGTTTTGGTGGCTCAGCAGAAGTACATATGAAGTGTAGGATTTGGGAACGAGAAGAGAGCGTCTCCGTCTCTCCTCGGCCTGCGCATGCAGTGACATTGAGAAGTGCAGGATATTCTCCAAATCCCGAGATACGTCGTTGGTTTGTAAATGGCCAAATGTCTTG

Ace file of the UniGene sp_v1.1_unigene89885 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative xyloglucan endotransglucosylase/hydrolase n=1 Tax=Selaginella kraussiana RepID=Q1XD17_9TRAC	-	-	1.0e-09	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	unknown [Picea sitchensis]	-	-	1.49208e-20	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD91

Fln msg: your sequence is shorter than subject: 53 - 285

Fln protein: GSSCTSWWDHPAYTSLTAKQSMQLKWVHDKYMIYDYCKDSVRFATPPAECTA*

Protein Length: 54

Fln nts: GGCAGCTCATGTACTTCGTGGTGGGATCATCCCGCCTACACCTCACTTACCGCAAAGCAGAGCATGCAACTCAAGTGGGTACACGACAAATACATGATTTACGATTACTGCAAAGATTCAGTTAGATTTGCTACACCTCCAGCAGAGTGTACTGCATGA___TGTGGGCTCTTTTAACTTGACTTTCTACCGATTCCATGATCTTAATCACAAATATTTGTTCCACTTGTATTAGTTTTAGTAGAGCCCTGTGCATTCCTGATAGCTTGGATGTTGAAATCTCTTTATATGGATATGATAACCGTTAACTACGGTAGTTAGTTCATCTGATCACGCCAAAGTTTATGTTTTGGTGGCTCAGCAGAAGTACATATGAAGTGTAGGATTTGGGAACGAGAAGAGAGCGTCTCCGTCTCTCCTCGGCCTGCGCATGCAGTGACATTGAGAAGTGCAGGATATTCTCCAAATCCCGAGATACGTCGTTGGTTTGTAAATGGCCAAATGTCTTG

Fln Alignment:

sp_v1.1_unigene89885___GSSCTSWWDHPAYTSLTAKQSMQLKWVHDKYMIYDYCKDSVRFATPPAEC
D5AD91_______________GSSCSSWWDQPAYASLNEKQSMQLKWVHEKYMIYDYCKDSVRFPTPPAEC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain