SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89880

Length: 519 nt

UniGene Fasta

>sp_v1.1_unigene89880
GGGAAAAATCACATTTCACAGCAGGGACGGACAGAGCATACTACCTCTCGAAGACAACATTCTAGGTCCAGAAGTCCTCGTTGGAGGCCACACAATTCTCATGAAGAAAAGCATGCAGCTGATAAACATTTTTCTCAGAATGAAGATCATGGTTCTTATCAAAGTCATGAACAGTCATTGGAAAGAAGTGCGTATGACAGGGAAAAGTGGGTTGCTGATGTACGAGGTAAAGAACTAGATCCTGGATTCAGGGGTGAACAGCATGTTTTCCCACATACATTGGAGGAGTTAGAGCAGGAATTTTCAAAAGAGGCCCTTGATTTATTCAGAGTCAAAAACATTGATGAAGAGGAAGAAAACATGAAGCATCGTGAGCGATTGAGCAAAATACGAGAAGCATTCCCGAAAAACATGATTACAGTTCGGGCAAGGCAAACAAAACAATGGGAAGACTTTATGCACCGTGAAACACATGCACTGCAGAAGAAGTATCAACATCAGTTGGATCACGGCCATTCC

Ace file of the UniGene sp_v1.1_unigene89880

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNB0_RICCO	-	-	6.0e-18	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	zinc knuckle (cchc-type) family protein	-	-	9.91104e-18	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUV4

Fln msg: Distance to subject end: 77 aas, your sequence is shorter than subject: 173 - 302

Fln protein: GKNHISQQGRTEHTTSRRQHSRSRSPRWRPHNSHEEKHAADKHFSQNEDHGSYQSHEQSLERSAYDREKWVADVRGKELDPGFRGEQHVFPHTLEELEQEFSKEALDLFRVKNIDEEEENMKHRERLSKIREAFPKNMITVRARQTKQWEDFMHRETHALQKKYQHQLDHGHS

Protein Length: 174

Fln nts: GGGAAAAATCACATTTCACAGCAGGGACGGACAGAGCATACTACCTCTCGAAGACAACATTCTAGGTCCAGAAGTCCTCGTTGGAGGCCACACAATTCTCATGAAGAAAAGCATGCAGCTGATAAACATTTTTCTCAGAATGAAGATCATGGTTCTTATCAAAGTCATGAACAGTCATTGGAAAGAAGTGCGTATGACAGGGAAAAGTGGGTTGCTGATGTACGAGGTAAAGAACTAGATCCTGGATTCAGGGGTGAACAGCATGTTTTCCCACATACATTGGAGGAGTTAGAGCAGGAATTTTCAAAAGAGGCCCTTGATTTATTCAGAGTCAAAAACATTGATGAAGAGGAAGAAAACATGAAGCATCGTGAGCGATTGAGCAAAATACGAGAAGCATTCCCGAAAAACATGATTACAGTTCGGGCAAGGCAAACAAAACAATGGGAAGACTTTATGCACCGTGAAACACATGCACTGCAGAAGAAGTATCAACATCAGTTGGATCACGGCCATTCC

Fln Alignment:

sp_v1.1_unigene89880___VADVRG----KELDPGFRGEQHVFPHTLEELEQEFSKEALDLFRVKNIDEEEENMKHRERLSKIREAFPKNMITVRARQTKQWEDFMHRETHALQKKYQ
A9NUV4_______________VKDVKGSEHEQEMDAGYQDPS--LPQTLELLEQRFMDEIMKLTKDQIDAEDEENRRHQECTREINFQYQEKLRAMRAQQAKYREEFLRREAQVRQQQYQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain