SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89820

Length: 463 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene89820
GTAATAATTAGATGTATAATGGAATATTGTAAATTCAGAAGCTTTGGATTGCTGGACTTGGATTTATTATGGTAAAAAATCGCTGAAATTTCTCTTAAAATGTATTCATTGTTGCAGGTTGAAGTAGTATCGCGGTTTTTGTAAAGGGCGAATCTCGTTTCTCGATCGAAATTTCGACAGGGCTTGCTATATTTTCAGTTTCTCGTCATAGGCATAAGAAGGGAAGAACTTTCACTTGATCCATATAAATGAGTACTGTATGTCCGTTTGCAAAGGCATTCAGCAAAGATGAGAACCACTCTGGAGAAAAGATCCAGGAAGAATGTGAGGAAGATTTAAATGATCAGCCTGACAATGATAAGAAAGGGAGGGATAATCAGTCAGATGGAGCCACTCCGAAATGCCCTTTTGGATACGACTCTCATTCATTTAAGCTGGGACCATTCAGCTGTGTAATTTGTCG

Ace file of the UniGene sp_v1.1_unigene89820 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein binding / zinc ion binding	-	-	1.0e-07	47%
FL-Next	tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	46%
Blast2go	unknown [Glycine max]	-	-	2.55881e-12	65%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: C6THX2

Fln msg: Distance to subject end: 116 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 71 - 189

Fln protein: MSTVCPFAKAFSKDENHSGEKIQEECEEDLNDQPDNDKKGRDNQSDGATPKCPFGYDSHSFKLGPFSCVIC

Protein Length: 72

Fln nts: GTAATAATTAGATGTATAATGGAATATTGTAAATTCAGAAGCTTTGGATTGCTGGACTTGGATTTATTATGGTAAAAAATCGCTGAAATTTCTCTTAAAATGTATTCATTGTTGCAGGTTGAAGTAGTATCGCGGTTTTTGTAAAGGGCGAATCTCGTTTCTCGATCGAAATTTCGACAGGGCTTGCTATATTTTCAGTTTCTCGTCATAGGCATAAGAAGGGAAGAACTTTCACTTGATCCATATAA_-_ATGAGTACTGTATGTCCGTTTGCAAAGGCATTCAGCAAAGATGAGAACCACTCTGGAGAAAAGATCCAGGAAGAATGTGAGGAAGATTTAAATGATCAGCCTGACAATGATAAGAAAGGGAGGGATAATCAGTCAGATGGAGCCACTCCGAAATGCCCTTTTGGATACGACTCTCATTCATTTAAGCTGGGACCATTCAGCTGTGTAATTTGTCG

Fln Alignment:

sp_v1.1_unigene89820___MSTVCPFAKAFSKDENHSGEKIQEECEEDLNDQPDNDKKGRDNQSDGAT--PKCPFGYDSHSFKLGPFSCVIC
C6THX2_______________MTPVCPFVKASRPDDNNASKK---SGENSMKHQVESESKGKKEVNDSASTSPKCPFGYDSHSFKIGPLSCTVC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain