SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89776

Length: 416 nt

UniGene Fasta

>sp_v1.1_unigene89776
GAGGACGAAGCCGACGATCAACGGCCAAGTGGATTTGAAATTGTGTTTCCAGCAATGTTGAACAAAGCAAAAAACCTATGGGTGGATTTGCCTTATGAATTACCATCCATCAAACAAATAATTCAGAAGCGAGAGGCTAAGCTTAAAAGGCTGCTTAATAAACTGATCTGGTTAAGCTTAAATGGTTGCTTAATTAAACTGATCTGATCAGATGCTTTTCTACGCATATTTCTTGAAAAAGTTGTTATTTCAGAGTTTAGATTTTTGCGAAGAGTTTTGTTTAGAAATTGTTTCTGTATTTATTGAATAAATATTAATCGTATGGGTCTTTCAAATTGATATATGATTCATCATCATTTTTCTCGTAAAAATTGTTTCTGGATCCAATGCATAAGTATTAATTGTATTACTTTTTT

Ace file of the UniGene sp_v1.1_unigene89776

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copalyl diphosphate synthase n=3 Tax=Picea RepID=TPSD2_PICAB	-	-	4.0e-15	71%
FL-Next	sp=Levopimaradiene synthase, chloroplastic; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	71%
Blast2go	levopimaradiene abietadiene synthase	-	-	7.0061e-15	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q675L4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 508 aas, your sequence is shorter than subject: 69 - 859

Fln protein: EDEADDQRPSGFEIVFPAMLNKAKNLWVDLPYELPSIKQIIQKREAKLKRLLNKLIWLSLNGCLIKLI*

Protein Length: 70

Fln nts: GAGGACGAAGCCGACGATCAACGGCCAAGTGGATTTGAAATTGTGTTTCCAGCAATGTTGAACAAAGCAAAAAACCTATGGGTGGATTTGCCTTATGAATTACCATCCATCAAACAAATAATTCAGAAGCGAGAGGCTAAGCTTAAAAGGCTGCTTAATAAACTGATCTGGTTAAGCTTAAATGGTTGCTTAATTAAACTGATCTGATCAGATGCTTTTCTACGCATATTTCTTGAAAAAGTTGTTATTTCAGAGTTTAGATTTTTGCGAAGAGTTTTGTTTAGAAATTGTTTCTGTATTTATTGAATAAATATTAATCGTATGGGTCTTTCAAATTGATATATGATTCATCATCATTTTTCTCGTAAAAATTGTTTCTGGATCCAATGCATAAGTATTAATTGTATTACTTTTTT

Fln Alignment:

sp_v1.1_unigene89776___EDEADDQRPSGFEIVFPAMLNKAKNLWVDLPYELPSIKQIIQKREAKLKRLLNKLIW
Q675L4_______________EDEADSHRPSGFEIVFPAMLKEAKVLGLDLPYELPFIKQIIEKREAKLERLPTNILY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain