SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89769

Length: 465 nt

UniGene Fasta

>sp_v1.1_unigene89769
TGAAGAACAACTATGGCCTCGCCTGCAAGCGATGGTTGTTCTTGCAGAGCACCGAGAGGCGGCGCCTCTGCGCGCGAGCGGGGCCTCTCATGCTGCACCGCCTCGCCGCTCGGTTTACTTGCGTCGTCGACTTGGACTTTTCGCAGTCGATTCTCAGGTCGTTTTACCCCGGGGTTTCTGATAACGATCTTCGTATTGTTGTCACCAGATTCCAGTGCCTCCGAAGCCTAAACCTGCGAGAATGCAAAGGAATTACTGATGCAGGACTTACAGCACTCGGGAAAGGTCTACCCAATTTGCATTCCTTGGATATTTCGCACTGCAAAAAATTACGGATCAAGGAATAAGGCCCCTTGCTGAGGGCTGTCCAAATTTGTCAACGTTGCGACTTGATGGCTGCAAATCTGTGACAGATGGGTCTTTGCAAGCACTATCTAAGAACTGCACAAAACTGGAAGAGCTGGG

Ace file of the UniGene sp_v1.1_unigene89769

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative F-box and leucine-rich repeat protein [Jatropha curcas]	-	-	2.0e-30	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	glucose regulated repressor	-	-	1.33684e-42	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVF7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 139 aas, your sequence is shorter than subject: 115 - 438

Fln protein: KNNYGLACKRWLFLQSTERRRLCARAGPLMLHRLAARFTCVVDLDFSQSILRSFYPGVSDNDLRIVVTRFQCLRSLNLRECKGITDAGLTALGKGLPNLHSLDISHCKKLRIKE*

Protein Length: 116

Fln nts: TGAAGAACAACTATGGCCTCGCCTGCAAGCGATGGTTGTTCTTGCAGAGCACCGAGAGGCGGCGCCTCTGCGCGCGAGCGGGGCCTCTCATGCTGCACCGCCTCGCCGCTCGGTTTACTTGCGTCGTCGACTTGGACTTTTCGCAGTCGATTCTCAGGTCGTTTTACCCCGGGGTTTCTGATAACGATCTTCGTATTGTTGTCACCAGATTCCAGTGCCTCCGAAGCCTAAACCTGCGAGAATGCAAAGGAATTACTGATGCAGGACTTACAGCACTCGGGAAAGGTCTACCCAATTTGCATTCCTTGGATATTTCGCACTGCAAAAAATTACGGATCAAGGAATAAGGCCCCTTGCTGAGGGCTGTCCAAATTTGTCAACGTTGCGACTTGATGGCTGCAAATCTGTGACAGATGGGTCTTTGCAAGCACTATCTAAGAACTGCACAAAACTGGAAGAGCTGGG

Fln Alignment:

sp_v1.1_unigene89769___PGVSDNDLRIVVTRFQCLRSLNLRECKGITDAGLTALGKGLPNLHSLDISHC
A9NVF7_______________PAASDRALLALAQNCCGLQSLNLGWCDRVTDVGVTGLAQGCPEMRAVDLCSC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain