SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89732

Length: 872 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene89732

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Picea sitchensis RepID=C0PT44_PICSI	-	-	73%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	pectin methylesterase-like protein	-	-	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pectin lyase fold	IPR012334	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT44

Fln msg: Overlapping hits, possible frame ERROR between 419 and 418, Distance to subject end: 137 aas, your sequence is shorter than subject: 290 - 601

Fln protein: QATCLQSLEEASGSLQNILTESVLNMRRVVSNSLALVKKISVVGKNSKRPHVHSRRLLSNPTSHEPHDQVDVDEDKFLSHYGVVNDGFPSWLSASDRRRLLQTSEENDGALAENVVTVAQDGSGNYSTITDALKVAPNxxSSVRYVIYVTEGVYQEYIEVPKYKTYIMLVGAGINSTVITGNRSVVDGWTTYRSATVAVVGQGFIARDITFENTAGPEKHQAVALRVASDLSAFYRCSFKGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNLLARKPMDNQK

Protein Length: 291

Fln nts: ATCAGGCTACCTGCCTCCAGAGTCTTGAGGAGGCTAGCGGAAGCCTGCAAAACATTTTGACTGAGAGTGTGCTTAATATGCGGCGTGTTGTGAGCAATTCATTGGCTCTTGTCAAAAAGATTTCTGTCGTCGGTAAAAATTCCAAGAGACCTCATGTGCACAGCCGACGCCTGTTATCCAATCCAACGAGTCATGAGCCTCACGATCAAGTTGATGTAGATGAAGATAAATTTCTTTCACATTATGGAGTCGTCAATGATGGATTCCCTTCATGGTTGTCTGCTTCAGACCGAAGGAGACTTCTTCAAACCTCTGAAGAAAATGATGGCGCTTTGGCCGAGAATGTCGTCACCGTGGCTCAAGATGGTAGTGGTAATTATTCCACAATTACTGACGCGCTAAAGGTTGCTCCAAACxxxxxxAGTTCAGTTAGATATGTGATATATGTTACAGAGGGAGTCTACCAGGAATACATTGAGGTGCCCAAATACAAAACATATATTATGTTGGTGGGAGCTGGCATAAATTCCACTGTGATCACCGGAAATAGAAGCGTTGTGGACGGATGGACTACTTATCGCTCTGCAACAGTCGCTGTAGTGGGGCAAGGCTTTATCGCTCGGGATATCACTTTCGAGAATACGGCGGGCCCAGAGAAGCATCAGGCTGTCGCTCTCCGCGTTGCCTCGGATCTATCAGCGTTCTACCGCTGCAGCTTCAAAGGTTACCAAGACACTCTTTACGCCCACTCCCTTCGGCAGTTCTACAGGGAATGCGACATTTATGGCACAGTTGATTTTATCTTCGGCAACGCTGCAGCTGTGTTTCAAAACTGCAATCTACTGGCTAGGAAACCGATGGATAATCAAAAGAA

Fln Alignment:

sp_v1.1_unigene89732___QATCLQSLEEASGSLQNILTESVLNMRRVVSNSLALVKKISVVGKNSKRPHVHSRRLLSNPTSHEPHDQVDVDEDKFLSHYGVVNDGFPSWLSASDRRRLLQTSEENDGALAENVVTVAQDGSGNYSTITDALKVAPNxSSVRYVIYVTEGVYQEYIEVPKYKTYIMLVGAGINSTVITGNRSVVDGWTTYRSATVAVVGQGFIARDITFENTAGPEKHQAVALRVASDLSAFYRCSFKGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNLLARKPMDNQK
C0PT44_______________QYTCLDS--SARSNLRQELQGGLMSISHLVSNSLAIVKNIATRASNVTVNSIHNRRLLS--------------DDQGSEFMAMESDGFPSWMSAKE-RSLLQSSRDN---IMPNAV-VAKDGSGHHTSIGDAVNAAPQxSRTRYVIHIKAGIYWENVEVNKKKTHLMFIGDGIGATVVAGNRNVKDGYTTYRSATVAVNGNGFIARDITFENTAGAAKHQAVALRVGSDFSAFYRCSFQGYQDTLYVHSLRQFYRECNVYGTVDFIFGNAAVVLQNCNLFARKPLANQQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain