SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89689

Length: 1495 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene89689

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nuclear acid binding protein, putative	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	84%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRZ2

Fln msg: Warning!, your query overlaps and the subject is separated, STOP codon was not found. Distance to subject end: 0 aas,

Fln protein: MMQPTVGVAPPPPVAAPAIDPQQQQQQWMMMQQQMQPQQPQPQPPPQAGFWPPQHQPQPQHPQPQLMAQQYPQQPTSADEIRTLWVGDLQYWMDESYLHGCFGNSQEVVSVKIIRNKQTGQSEGYGFVEFASHAGAERALQTYNGAQMPSTEQFYRINWATFGIGEKRPEIGPDYPIFVGDLASDVTDYLLQETFRNRYQTVKGAKVVTDRVTGRSKGYGFVRFGDENEQVRAMTEMNGVFCSSRPMRIGPxxxxxxxTAAVPPQVVASDNDPNNTTIFVGGLDPTVTDDMLRSLFGQFGELVHVKIPVGKRCGFVQFNNRASAEEALQMLHGTVLGQQAIRLSWGRSPANKQTAGWVQPQQPDPNQWNGAYYGYGQGYDAGYGYAPQPQDPNMYSYAPYAYGNYQQQ

Protein Length: 409

Fln nts: CATTAGCGCAATTTCATTCCCCTTTTTGGCTCCTTCGGAGCTCGCGCAGATTACAGAGAAACCCTAGTCTCGTGGATTCTCGATCGAAATCTGCACGGCCTGTATACAGTCTTAGCACATTCACTGAGCTGCCATAGGTTTCTTGGAACTCTTTGTTCCGCGGCTCTTGCGAGTTTCGCAGGATTTTGTTTGATTGTATTTTGAGGGTTTTTCTTTGCTTCGAGGGTTTTGTTTTCCCGTTTTTGTCCCCTTATTCTTTCAAGACATCTCAGA_-_ATGATGCAGCCAACCGTAGGTGTCGCTCCTCCCCCTCCTGTTGCTGCACCCGCGATCGATCCCCAGCAGCAGCAACAGCAGTGGATGATGATGCAGCAGCAGATGCAGCCTCAGCAGCCTCAGCCTCAGCCGCCTCCTCAGGCTGGGTTTTGGCCCCCGCAACACCAACCCCAACCGCAGCATCCCCAACCGCAGCTTATGGCTCAGCAATACCCGCAGCAGCCGACCTCAGCTGACGAGATTAGAACCCTGTGGGTTGGAGATTTGCAGTATTGGATGGATGAGAGTTATCTGCATGGCTGTTTTGGTAATAGCCAAGAGGTTGTTTCTGTTAAAATTATTCGCAATAAACAGACTGGACAATCAGAGGGTTATGGCTTTGTAGAGTTTGCAAGCCATGCAGGAGCTGAAAGAGCTTTGCAAACTTACAATGGTGCACAGATGCCCAGCACTGAACAATTTTACAGGATAAATTGGGCAACCTTTGGCATTGGAGAAAAGCGCCCTGAGATTGGACCTGATTATCCTATATTTGTTGGAGATTTAGCATCTGATGTGACAGACTATTTGTTGCAAGAGACATTCCGAAATAGATACCAAACTGTAAAAGGAGCCAAGGTTGTTACTGATAGGGTTACAGGCCGTTCAAAAGGATATGGGTTTGTAAGGTTTGGGGATGAGAATGAGCAAGTTCGGGCTATGACAGAGATGAATGGGGTGTTTTGTTCCTCAAGACCTATGCGAATAGGTCCTGxxxxxxxxxxxxxxxxxxxAACAGCGGCAGTTCCTCCTCAAGTAGTTGCCTCAGATAATGATCCAAATAATACAACTATATTTGTGGGTGGCTTAGACCCAACTGTGACAGATGATATGCTGAGATCGTTATTTGGTCAGTTTGGAGAACTTGTGCATGTCAAAATACCAGTGGGCAAACGTTGTGGATTTGTTCAGTTTAATAACAGGGCTTCTGCAGAGGAAGCATTGCAAATGCTACATGGTACAGTTCTTGGTCAGCAAGCCATTCGTCTTTCTTGGGGACGGAGTCCTGCAAACAAACAAACTGCTGGGTGGGTTCAACCCCAACAACCAGATCCAAATCAATGGAATGGAGCTTATTATGGTTATGGACAAGGATATGATGCAGGTTATGGTTATGCACCACAACCTCAGGATCCCAATATGTACAGTTATGCCCCTTATGCATATGGAAATTATCAGCAGCAG

Fln Alignment:

sp_v1.1_unigene89689___TSADEIRTLWVGDLQYWMDESYLHGCFGNSQEVVSVKIIRNKQTGQSEGYGFVEFASHAGAERALQTYNGAQMPSTEQFYRINWATFGIGEKRPEIGPDYPIFVGDLASDVTDYLLQETFRNRYQTVKGAKVVTDRVTGRSKGYGFVRFGDENEQVRAMTEMNGVFCSSRPMRIGPATTKKTxxxxxPQQRRQTAAVPPQVVASDNDPNNTTIFVGGLDPTVTDDMLRSLFGQFGELVHVKIPVGKRCGFVQFNNRASAEEALQMLHGTVLGQQAIRLSWGRSPANK--QTAGWVQPQQPDPNQWN-XXXXXXXXXXXXXXXXXPQPQDPNMYSYAPYAYGNYQQQ
B8LRZ2_______________TSADEVRTLWVGDLQYWMDETYMQSCFGNNQEVVSVKIIRNKQTGQSEGYGFVEFASHAGAERFLQNHNGAQMPNTEQFYRLNWATFGIGEKRPEMGPDYPIFVGDLASDVTDYLLQETFRSRYQTVKGAKVVSDRVTGRSKGYGFVRFGDENEQVRAMTEMNGMFCSSRPMRTGPATTKKTxxxxxPYPKAAAAAVPPQVVASDNDPNNTTIFVGGLDPSVTDEMLRQLFGQFGELVHVKIPVGKRCGFVQFNNRASAEEALQMLHGTVLGQQAIRLSWGRSPANKQVQTPGWVQPQQPDPNQWNGAAYYGYGQGYDAGYGYAPQPQDPNMYSYAPYAYGNYQQQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain