SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89637

Length: 492 nt

UniGene Fasta

>sp_v1.1_unigene89637
TGCAAGATATTATACTCCAGTTATTGTGGTGGCAGCTCTAGCAATGGTATTAGCCCCTTGCATTGATCGCTCGCTTGGATTTCGCAACTGGGCTTATAAAGCCTTAGTTCTTGTGGTAACCGCTTGCCCATGCGCCTTGGTAATCTCAACACCAGTGGCCACGGCGTGTGGGTTGGCCCATGCTGCTAGAGTAGGGCTCCTTATCAAAGGTGGGAAGTATCTGGAAGCCTTGGGGAAGCTTAAGGCGATAGCGTTTGATAAAACTGGAACACTCACAGAAGGAATATTCAGGGTGATAGATGTAGAGTTCATTGAGTCTGAGACCACTGATAAGCAGAAATGGATATCTTGGATAGCCAGCCTTGAAAGTAGGTCGAGTCATCCCATGTCAGTTGCAATTGTATCATACTGTAGACAAAAAGGCCTAGAGCTGTCAGCAGAGGTGGAGGATTTCGACATACTGGAAGGAGAAGGCATCTGCGGAGTGGTGGA

Ace file of the UniGene sp_v1.1_unigene89637

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HMA2; HMA2; cadmium-transporting ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]	-	-	2.0e-33	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	heavy metal transporter 3	-	-	9.82576e-41	67%

Source	ECs	Term	Type	e value	Identity
AutoFact	Cadmium-exporting ATPase.	EC:3.6.3.3	-	2.0e-33	45%
AutoFact	Zinc-exporting ATPase.	EC:3.6.3.5	-	2.0e-33	45%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	9.82576e-41	67%
Blast2go	Haloacid dehalogenase-like hydrolase	IPR005834	-	9.82576e-41	67%
Blast2go	ATPase, P-type, ATPase-associated domain	IPR008250	-	9.82576e-41	67%
Blast2go	ATPase, P-type phosphorylation site	IPR018303	-	9.82576e-41	67%
Blast2go	ATPase, P-type, cytoplasmic domain N	IPR023299	-	9.82576e-41	67%
Blast2go	ATPase, cation-transporting, domain N	IPR023306	-	9.82576e-41	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ20

Fln msg: Distance to subject end: 267 aas, your sequence is shorter than subject: 163 - 998

Fln protein: ARYYTPVIVVAALAMVLAPCIDRSLGFRNWAYKALVLVVTACPCALVISTPVATACGLAHAARVGLLIKGGKYLEALGKLKAIAFDKTGTLTEGIFRVIDVEFIESETTDKQKWISWIASLESRSSHPMSVAIVSYCRQKGLELSAEVEDFDILEGEGICGVV

Protein Length: 164

Fln nts: TGCAAGATATTATACTCCAGTTATTGTGGTGGCAGCTCTAGCAATGGTATTAGCCCCTTGCATTGATCGCTCGCTTGGATTTCGCAACTGGGCTTATAAAGCCTTAGTTCTTGTGGTAACCGCTTGCCCATGCGCCTTGGTAATCTCAACACCAGTGGCCACGGCGTGTGGGTTGGCCCATGCTGCTAGAGTAGGGCTCCTTATCAAAGGTGGGAAGTATCTGGAAGCCTTGGGGAAGCTTAAGGCGATAGCGTTTGATAAAACTGGAACACTCACAGAAGGAATATTCAGGGTGATAGATGTAGAGTTCATTGAGTCTGAGACCACTGATAAGCAGAAATGGATATCTTGGATAGCCAGCCTTGAAAGTAGGTCGAGTCATCCCATGTCAGTTGCAATTGTATCATACTGTAGACAAAAAGGCCTAGAGCTGTCAGCAGAGGTGGAGGATTTCGACATACTGGAAGGAGAAGGCATCTGCGGAGTGGTGGA

Fln Alignment:

sp_v1.1_unigene89637___ALVLVVTACPCALVISTPVATACGLAHAARVGLLIKGGKYLEALGKLKAIAFDKTGTLTEGIFRVIDVEFIESETTDKQKWISWIASLESRSSHPMSVAIVSY
B8LQ20_______________AISVLVIACPCALGLATPTAVMVATGIGATHGVLIKGGDALERAQKIQCVVFDKTGTLTKGKPSVTSAKVLSD--MQRGEFLRIVASAEASSEHPLARAVVDY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain