SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89621

Length: 448 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene89621
CTCTCAATCTTGATGAGCATTCATACTTTGAGAAGGCTCTCTCCCTGAGACAAAATATAGACATTCTTGGGGCTCTTAAAACTGCAGGTATTAAACCCGATGGAAACCAATACAGTTTGAGCGATATCAAGGAAGCCATTAAGCAAAACACTGGGCAGCTCCCAGGAATCGATTGCAACATAAGCGCAGAGGGAGAACATCAACTATATCAGGTGTATGTGTGTGTGGATAAATCCGATGCTTCCACTGTTATTGAATGCCCCATTTACCCACACAGCAATTGCCCATCCATGGTTGTGTTTCCTCCTTTTGGGGACGATCAGGAGGACCGACGTGGTTACACAGAAGAAATAGAGGAGCTGTAGATCTGGAAAAACAGCATTTCTTCTCTCCGCATTTGATTCGTATCAATGAAATTGCCGATTCCAACTTGACATTTTGTAGATTT

Ace file of the UniGene sp_v1.1_unigene89621 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribonuclease t2, putative n=1 Tax=Ricinus communis RepID=B9S8X4_RICCO	-	-	4.0e-25	54%
FL-Next	sp=Ribonuclease 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	49%
Blast2go	ribonuclease	-	-	5.81802e-25	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	5.81802e-25	67%
Blast2go	anthocyanin biosynthetic process	GO:0009718	Biological Process	5.81802e-25	67%
Blast2go	response to wounding	GO:0009611	Biological Process	5.81802e-25	67%
Blast2go	aging	GO:0007568	Biological Process	5.81802e-25	67%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	5.81802e-25	67%
Blast2go	ribonuclease activity	GO:0004540	Molecular Function	5.81802e-25	67%
Blast2go	extracellular region	GO:0005576	Cellular Component	5.81802e-25	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.81802e-25	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribonuclease T2	IPR001568	-	5.81802e-25	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P42813

Fln msg: your sequence is shorter than subject: 121 - 230

Fln protein: LNLDEHSYFEKALSLRQNIDILGALKTAGIKPDGNQYSLSDIKEAIKQNTGQLPGIDCNISAEGEHQLYQVYVCVDKSDASTVIECPIYPHSNCPSMVVFPPFGDDQEDRRGYTEEIEEL*

Protein Length: 122

Fln nts: CTCTCAATCTTGATGAGCATTCATACTTTGAGAAGGCTCTCTCCCTGAGACAAAATATAGACATTCTTGGGGCTCTTAAAACTGCAGGTATTAAACCCGATGGAAACCAATACAGTTTGAGCGATATCAAGGAAGCCATTAAGCAAAACACTGGGCAGCTCCCAGGAATCGATTGCAACATAAGCGCAGAGGGAGAACATCAACTATATCAGGTGTATGTGTGTGTGGATAAATCCGATGCTTCCACTGTTATTGAATGCCCCATTTACCCACACAGCAATTGCCCATCCATGGTTGTGTTTCCTCCTTTTGGGGACGATCAGGAGGACCGACGTGGTTACACAGAAGAAATAGAGGAGCTGTAG___ATCTGGAAAAACAGCATTTCTTCTCTCCGCATTTGATTCGTATCAATGAAATTGCCGATTCCAACTTGACATTTTGTAGATTT

Fln Alignment:

sp_v1.1_unigene89621___LDEHSYFEKALSLRQNIDILGALKTAGIKPDGNQYSLSDIKEAIKQNTGQLPGIDCNISAEGEHQLYQVYVCVDKSDASTVIECPIYPHSNCPSMVVFPPF
P42813_______________IDQHEYFQTALNLKQKTNLLGALTKAGINPDGKSYSLESIRDSIKESIGFTPWVECNRDGSGNSQLYQVYLCVDRS-GSGLIECPVFPHGKCGAEIEFPSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain