SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89595

Length: 1057 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene89595

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Picea sitchensis RepID=A9NK21_PICSI	-	-	85%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	cyclophilin	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	86%
Blast2go	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	86%
Blast2go	membrane fraction	GO:0005624	Cellular Component	86%
Blast2go	multivesicular body	GO:0005771	Cellular Component	86%
Blast2go	Golgi stack	GO:0005795	Cellular Component	86%
Blast2go	cytosol	GO:0005829	Cellular Component	86%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	86%
Blast2go	Cyclophilin-like	IPR015891	-	86%
Blast2go	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	IPR020892	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK21

Fln msg: Separated hits, possible frame ERROR between 701 and 718,

Fln protein: MARQSTILLFWSLVFLGAIVFTQAKHEDLEEVTHKVYFDVDIAGKPAGRVVIGLFGKAVPKTVENFRALCTGEKGVGKSGKPLHYKGSFFHRIIPSFMIQGGDFTLGDGRGGESIYGTKFADENFKLKHTGPGFLSMANAGxxxxxxxDWLDGRHVVFGKIISGMDVVYKVEAEGRQSGQPKRKVKIADSGELSMD*

Protein Length: 198

Fln nts: CTGGCTTCTGGTGACACAAATGTCACAGGTGAATTGATTGAATAATAGAAAGTAGCGTTTATGGTTGATATAATCCAGTCCTTTTATCTTCAGTCTTGTTGTAGGCACCTTATCCAAAACACGAGGACCCACTTATCCAAAACACGAGGACCCCTGCAATTAAAGATGCTCATCTTGGCTCCTCCATTTTCAACCAGTGGGATGATAACTTGAATAAGTACGCGGGGGTATTGTGAGAGTTTGAACGACCTTCAAAGGGACTGGTTGCGAGAAAT_-_ATGGCGAGGCAAAGTACTATACTGCTCTTTTGGAGCTTAGTATTCTTGGGTGCCATCGTATTTACTCAGGCCAAGCATGAGGATCTGGAAGAGGTGACACACAAGGTATACTTTGATGTGGATATTGCTGGAAAACCTGCTGGTCGAGTTGTTATTGGACTCTTTGGGAAAGCTGTACCCAAAACTGTAGAGAATTTTCGGGCACTTTGTACAGGTGAGAAGGGGGTTGGAAAAAGTGGAAAGCCACTCCATTACAAGGGAAGTTTTTTCCATAGGATCATTCCCAGCTTCATGATTCAAGGTGGTGATTTCACTCTTGGAGATGGCAGAGGGGGAGAGTCAATCTATGGAACTAAATTTGCTGATGAGAACTTCAAACTCAAGCACACAGGACCAGGATTCCTCTCCATGGCAAATGCTGGTCCxxxxxxxxxxxxxxxxxxCGACTGGTTGGACGGCAGACATGTTGTCTTTGGAAAAATTATTTCTGGAATGGATGTTGTATATAAAGTAGAAGCAGAAGGAAGACAGAGTGGTCAACCAAAAAGGAAAGTAAAGATTGCAGACAGTGGAGAGCTTTCTATGGATTAG___CTTACTCTTCTAGTTGAGATCTCCATCAATCAATGGATACAAACATTGAGTTTCAGTTTGGCAAACCGACATTCCCAAATTTAATGAGCCAATATGTTTGGATCGTCATAAAGCCTGGGATAATCTTAAATAATAAATATCGAGTTGGTGACCCAGTTAGCTGTTAATTTATAATCTCCGCATCTCCCCCAAT

Fln Alignment:

sp_v1.1_unigene89595___MARQSTILLFWSLVFLGAIVFTQAKHEDLEEVTHKVYFDVDIAGKPAGRVVIGLFGKAVPKTVENFRALCTGEKGVGKSGKPLHYKGSFFHRIIPSFMIQXXXXXXXXXXXXESIYGTKFADENFKLKHTGPGFLSMANAGPxxxxxxDWLDGRHVVFGKIISGMDVVYKVEAEGRQSGQPKRKVKIADSGELSMD
A9NK21_______________MARQSTILLFWSLVFLGAIAFTQAKNENPEEITHKVYFDVEIAGKPAGRVVIGLFGKTVPKTVENFRALCTGEKGVGKSGKPLHYKGSFFHRIIPSFMIQGGDFTLGDGRGGESIYGIKFADENFKLKHTGPGFLSMANAGPxxxxxxDWLDGRHVVFGKVISGMDVVYKVEAEGKQSGQPKRKVKIADSGELSTD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain