SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89583

Length: 426 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene89583
AGCATATCATTTGTTTGCAGAGATTTGTTGGGTAAGGCCAATGCTGATCAAGATGGTCTCCAAACTGTTGCTGGTGTTCTTGGTAGCTGCAATGGCTGCTATGGCTGCCTCACCTCCTAAGCCTGTGGACGTACCATTCCCAAAAAATTATGTACCCACTTGGGCTGCTGATCATATCAAGTACATCAATGGTGGAAATGAGGTTCAGCTTTCTCTAGACAAATGGACAGGTACTGGCTTCCAATCCAAGGGTACCTACTTGTTTGGACACTTTAGTATGCAGATAAAGATGGTTCCTGGTGACTCTGCAGGCACTGTGACTGCCTTTTATCTATCCTCCCAGAATGCTGAGCACGATGAAATAGATTTTGAGTTCCTGGGCAATAGGTCTGGACAGCCTTACATTCTCCAAACTAATGTTTTCAG

Ace file of the UniGene sp_v1.1_unigene89583 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen major allergen No.121 isoform 2 n=1 Tax=Cryptomeria japonica RepID=Q588B9_CRYJA	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	xyloglucan endotransglycosylase precursor	-	-	88%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 16	IPR000757	-	88%
Blast2go	Glycoside hydrolase, family 16, active site	IPR008263	-	88%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	88%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	88%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2N8

Fln msg: Distance to subject end: 165 aas, your sequence is shorter than subject: 128 - 294

Fln protein: MLIKMVSKLLLVFLVAAMAAMAASPPKPVDVPFPKNYVPTWAADHIKYINGGNEVQLSLDKWTGTGFQSKGTYLFGHFSMQIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRSGQPYILQTNVF

Protein Length: 129

Fln nts: AGCATATCATTTGTTTGCAGAGATTTGTTGGGTAAGGCCA_-_ATGCTGATCAAGATGGTCTCCAAACTGTTGCTGGTGTTCTTGGTAGCTGCAATGGCTGCTATGGCTGCCTCACCTCCTAAGCCTGTGGACGTACCATTCCCAAAAAATTATGTACCCACTTGGGCTGCTGATCATATCAAGTACATCAATGGTGGAAATGAGGTTCAGCTTTCTCTAGACAAATGGACAGGTACTGGCTTCCAATCCAAGGGTACCTACTTGTTTGGACACTTTAGTATGCAGATAAAGATGGTTCCTGGTGACTCTGCAGGCACTGTGACTGCCTTTTATCTATCCTCCCAGAATGCTGAGCACGATGAAATAGATTTTGAGTTCCTGGGCAATAGGTCTGGACAGCCTTACATTCTCCAAACTAATGTTTTCAG

Fln Alignment:

sp_v1.1_unigene89583___MLIKMVSKLLLVFLVXXXXXXXASPPKPVDVPFPKNYVPTWAADHIKYINGGNEVQLSLDKWTGTGFQSKGTYLFGHFSMQIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRSGQPYILQTNVF
A9P2N8_______________MLIKMVPKLLLVLLVAATAAMAVSPPKPVDVPFPKNYVPSWAADHIKYINGGNEIQLSLDKWTGTGFQSKGSYLFGHFSMQIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRSGQPYILQTNVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain