SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89537

Length: 526 nt

UniGene Fasta

>sp_v1.1_unigene89537
TAATGAAAAAGTTTCAGGTAGACAGAGGGGCAATCAAATTTGTCCTTGCTGGAGCAAACATCATGTGTCCTGGACTCACATCTCCTGGTGGCGCTTTGGATGATGACGTTCCTGCAGAATCACCTGTGGCAGTAATGGCTGAAGGAAAAGAGAATGCACTTGCAATTGGATTTACAAAGATGTCAGCGAAGGACATAAAAGCAATCAACAAAGGAATAGGTGTTGATAACATGCACTATCTCAATGATGGCCTTTGGAAGACAGTGCAGTTGAACTGATTGCAGCTGGGATGCTGAAGAAAGAATCATAGATTGACTACAAAATTTCTATATCTTGTTTTATTGCTGGTTTCCAGGACTTTGGGTTTCTTGCATGCAAAATTACTTTGGAAAGAGCGTTTTTTGTGCATTTGCCATTGTTCCAAATCAGGATTTTGATAACTGAAAAGCATCTTTCATATAGTTGTACACAATTGAACTACTTGGTTATATAGCCCAAGTACTTGAATACAGGCTGTGTACGATAT

Ace file of the UniGene sp_v1.1_unigene89537

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TEP4_PHYPA	-	-	2.0e-39	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	mct-1 like pua rna binding-domain containing protein	-	-	1.26117e-44	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pseudouridine synthase/archaeosine transglycosylase	IPR002478	-	1.26117e-44	93%
Blast2go	Uncharacterised domain CHP00451	IPR004521	-	1.26117e-44	93%
Blast2go	PUA-like domain	IPR015947	-	1.26117e-44	93%
Blast2go	Translation-associated RNA-binding, predicted	IPR016437	-	1.26117e-44	93%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLI5

Fln msg: your sequence is shorter than subject: 92 - 181

Fln protein: MKKFQVDRGAIKFVLAGANIMCPGLTSPGGALDDDVPAESPVAVMAEGKENALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLWKTVQLN*

Protein Length: 93

Fln nts: TAATGAAAAAGTTTCAGGTAGACAGAGGGGCAATCAAATTTGTCCTTGCTGGAGCAAACATCATGTGTCCTGGACTCACATCTCCTGGTGGCGCTTTGGATGATGACGTTCCTGCAGAATCACCTGTGGCAGTAATGGCTGAAGGAAAAGAGAATGCACTTGCAATTGGATTTACAAAGATGTCAGCGAAGGACATAAAAGCAATCAACAAAGGAATAGGTGTTGATAACATGCACTATCTCAATGATGGCCTTTGGAAGACAGTGCAGTTGAACTGA___TTGCAGCTGGGATGCTGAAGAAAGAATCATAGATTGACTACAAAATTTCTATATCTTGTTTTATTGCTGGTTTCCAGGACTTTGGGTTTCTTGCATGCAAAATTACTTTGGAAAGAGCGTTTTTTGTGCATTTGCCATTGTTCCAAATCAGGATTTTGATAACTGAAAAGCATCTTTCATATAGTTGTACACAATTGAACTACTTGGTTATATAGCCCAAGTACTTGAATACAGGCTGTGTACGATAT

Fln Alignment:

sp_v1.1_unigene89537___MKKFQVDRGAIKFVLAGANIMCPGLTSPGGALDDDVPAESPVAVMAEGKENALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLWKTVQLN
A9NLI5_______________MKKMQVDRGAIKFVLAGANIMCPGLTSPGGALDDDIPAESPVAVMAEGKENALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLWKTVQLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain