SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89318

Length: 955 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene89318 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase delta catalytic subunit n=5 Tax=Poaceae RepID=DPOD1_ORYSJ	-	-	75%
FL-Next	sp=DNA polymerase delta catalytic subunit; Oryza sativa subsp. japonica (Rice).	-	-	86%
Blast2go	protein	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	91%

Source	InterPros	Term	Type	Identity
Blast2go	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	91%
Blast2go	DNA-directed DNA polymerase, family B	IPR006172	-	91%
Blast2go	DNA polymerase, palm domain	IPR023211	-	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LRE6

Fln msg: Separated hits, possible frame ERROR between 653 and 832, Distance to subject end: 305 aas, your sequence is shorter than subject: 318 - 1105

Fln protein: DLGCHSFLLSRGQSIKVLSQILRKSRQKNLLVPNIKGQGSGQETFEGATVLEAKSGFYEKPIATLDFASLYPSIMMAYNLCYCSLVRSEDIAKFNLQPECVNKTPSGETFVKPTLQKGILPEILEELLAARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKRLVEERFTIVGGYQYNAEVGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGDTDSVMIQFGVPNIEEAMTLGREASDYISGTFTKPIKLEF

Protein Length: 319

Fln nts: GTGACCTTGGCTGTCACTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAGAATCTTCTTGTGCCAAATATTAAAGGCCAAGGCTCTGGACAGGAGACTTTTGAAGGTGCAACGGTTTTGGAGGCAAAATCAGGTTTCTATGAAAAACCAATTGCAACTCTGGACTTTGCGTCCTTGTATCCTTCAATCATGATGGCATATAATCTTTGTTATTGCAGCTTGGTGAGGTCAGAGGACATTGCAAAATTTAATCTCCAGCCAGAGTGTGTAAATAAAACACCATCGGGCGAGACTTTTGTGAAGCCAACTTTACAGAAGGGTATATTACCAGAGATCCTAGAAGAGTTACTGGCCGCCAGGAAAAGAGCCAAGGCAGACCTAAAGGAGGCTAAAGATCCTTTTGAAAAGGCTGTCTTGGACGGCCGACAATTGGCTTTGAAGATCAGTGCGAATTCAGTTTATGGGTTTACTGGTGCCACTGTTGGGCAATTGCCCTGTTTGGAGATTTCGTCGAGTGTGACGAGCTATGGCCGTCAAATGATAGAGCATACAAAGAGGCTAGTTGAAGAAAGGTTCACAATAGTTGGTGGTTACCAATACAATGCTGAGGTAGGCTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGAGATACAGATTCAGTTATGATACAGTTTGGTGTACCAAATATAGAAGAGGCCATGACGCTAGGGAGGGAAGCCTCAGATTATATTAGTGGTACATTTACAAAGCCTATTAAACTAGAATTTG

Fln Alignment:

sp_v1.1_unigene89318___SFLLSRGQSIKVLSQILRKSRQKNLLVPNIKGQGSGQETFEGATVLEAKSGFYEKPIATLDFASLYPSIMMAYNLCYCSLVRSEDIAKFNLQPECVNKTPSGETFVKPTLQKGXXXXXXXXXXXXXXXXXXXXXXXXDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKRLVEERFTIVGGYQYNAEVGYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGDTDSVMIQFGVPNIEEAMTLGREASDYISGTFTKPIKLEF
Q9LRE6_______________SFLLSRGQSIKVLSQLLRKAKQKNLVIPNIKGQASGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPPESVNKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain