SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene89035

Length: 489 nt

UniGene Fasta

>sp_v1.1_unigene89035
CGTGACCTTGGCTGTCACTCACTATTTTCCTAGTTTAATATGCGCGTTTTGAATACACTGCTCGATTATTTTGACAATTCTCGTGTCAGACAGGTGTTGGGCAGGTGCTTTCTTACTTTTTTCGAGACATTATTGACTTGTTTTCTGTCACCCAAATTTCCTTAATTAGATTCAGATACCGATGGAGCATATTTCGGAACCACATTTCCTCATCTATTTTTGATGACATATGCACACATAAAGCCATCCAGGCCAATGCAGAGCTATGTTCCAAAGATCTTTGGTTTTAAAATCCACAAAAGTGCACGATGAACCAAGTATAATGATGTAACTGTAGTTAGTTGTGACAAGCAGTAGCTCTTGCCCACGAGGGTTGTACTTCATATTATTTTTCATTAAATTGTTTAAGATATAAGTTAATGTGATTGTCACCTCCATTATGGCCATGTACAAAATGGTAAAATTATAGAGCGTTGGGATTTTGAGACT

Ace file of the UniGene sp_v1.1_unigene89035

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CKB3; CKB3; protein kinase regulator/ transcription factor binding; K03115 casein kinase 2, beta polypeptide	-	-	2.0e-14	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	6.22589e-19	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription factor binding	GO:0008134	Molecular Function	6.22589e-19	90%
Blast2go	protein kinase regulator activity	GO:0019887	Molecular Function	6.22589e-19	90%
Blast2go	protein kinase CK2 complex	GO:0005956	Cellular Component	6.22589e-19	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPQ3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 104 - 297

Fln protein: RDLGCHSLFS*FNMRVLNTLLDYFDNSRVRQVLGRCFLTFFETLLTCFLSPKFP*LDSDTDGAYFGTTFPHLFLMTYAHIKPSRPMQSYVPKIFGFKIHKSAR*

Protein Length: 105

Fln nts: CGTGACCTTGGCTGTCACTCACTATTTTCCTAGTTTAATATGCGCGTTTTGAATACACTGCTCGATTATTTTGACAATTCTCGTGTCAGACAGGTGTTGGGCAGGTGCTTTCTTACTTTTTTCGAGACATTATTGACTTGTTTTCTGTCACCCAAATTTCCTTAATTAGATTCAGATACCGATGGAGCATATTTCGGAACCACATTTCCTCATCTATTTTTGATGACATATGCACACATAAAGCCATCCAGGCCAATGCAGAGCTATGTTCCAAAGATCTTTGGTTTTAAAATCCACAAAAGTGCACGATGA___ACCAAGTATAATGATGTAACTGTAGTTAGTTGTGACAAGCAGTAGCTCTTGCCCACGAGGGTTGTACTTCATATTATTTTTCATTAAATTGTTTAAGATATAAGTTAATGTGATTGTCACCTCCATTATGGCCATGTACAAAATGGTAAAATTATAGAGCGTTGGGATTTTGAGACT

Fln Alignment:

sp_v1.1_unigene89035___DTDGAYFGTTFPHLFLMTYAHIKPSRPMQSYVPKIFGFKIHKSAR
B8LPQ3_______________NTDGAYFGTTFPHLFLMTYAHIKPSRPMQSYVPKIFGFKIHKSAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain