SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene88686

Length: 444 nt

UniGene Fasta

>sp_v1.1_unigene88686
CGTGACCTTGGCTGTCACTCATCTCATACCAAGTGATGCAGTCTCCACAGGCAGCAGCATAATGCCTCAGAAAAAGAATCCAGATCCTATGGAACTTGTCCGTGGAAAATCTGCCAGAGTGATTGGAGACTTGACTACTTTGTTAGTACTTTGCAAAGGACTGCCTCAGGCTTACAACCGTGACCTACAGGAGGACAAGGAACCCTTATTTGACAGCGTGGAAACAATTGTAGCAATGCTCGAGGTAACAACTGAATTTGCACAAAATATTACTTTCAATCAGAAGCGCATCTCTAGATCTCTACCTGCTGGACATCTGGATGCCACAACAATGGCTGACTACCTTGTACACAAGGGTACACCTTTCCGAACATCTCATGATATTGTGGGAAAAGCTGTAGCTCTAAGTCTCACAAAAGAATGCCAACTTTCAGAACTCTCTCT

Ace file of the UniGene sp_v1.1_unigene88686

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	argininosuccinate lyase, putative (EC:4.3.2.1); K01755 argininosuccinate lyase [EC:4.3.2.1]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	argininosuccinate lyase	-	-	89%

Source	ECs	Term	Type	e value	Identity
AutoFact	Argininosuccinate lyase.	EC:4.3.2.1	-	0.0	79%

Source	KEGGs	Term	Identity
AutoFact	Alanine, aspartate and glutamate metabolism	00250	79%
AutoFact	Arginine and proline metabolism	00330	79%
AutoFact	Metabolic pathways	01100	79%
AutoFact	Biosynthesis of secondary metabolites	01110	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	89%

Source	InterPros	Term	Type	Identity
Blast2go	Delta crystallin	IPR003031	-	89%
Blast2go	L-Aspartase-like	IPR008948	-	89%
Blast2go	Argininosuccinate lyase	IPR009049	-	89%
Blast2go	Fumarate lyase, conserved site	IPR020557	-	89%
Blast2go	Lyase 1, N-terminal	IPR022761	-	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWV6

Fln msg: Distance to subject end: 57 aas, your sequence is shorter than subject: 147 - 530

Fln protein: VTLAVTHLIPSDAVSTGSSIMPQKKNPDPMELVRGKSARVIGDLTTLLVLCKGLPQAYNRDLQEDKEPLFDSVETIVAMLEVTTEFAQNITFNQKRISRSLPAGHLDATTMADYLVHKGTPFRTSHDIVGKAVALSLTKECQLSELS

Protein Length: 148

Fln nts: CGTGACCTTGGCTGTCACTCATCTCATACCAAGTGATGCAGTCTCCACAGGCAGCAGCATAATGCCTCAGAAAAAGAATCCAGATCCTATGGAACTTGTCCGTGGAAAATCTGCCAGAGTGATTGGAGACTTGACTACTTTGTTAGTACTTTGCAAAGGACTGCCTCAGGCTTACAACCGTGACCTACAGGAGGACAAGGAACCCTTATTTGACAGCGTGGAAACAATTGTAGCAATGCTCGAGGTAACAACTGAATTTGCACAAAATATTACTTTCAATCAGAAGCGCATCTCTAGATCTCTACCTGCTGGACATCTGGATGCCACAACAATGGCTGACTACCTTGTACACAAGGGTACACCTTTCCGAACATCTCATGATATTGTGGGAAAAGCTGTAGCTCTAAGTCTCACAAAAGAATGCCAACTTTCAGAACTCTCTCT

Fln Alignment:

sp_v1.1_unigene88686___LIPSDAVSTGSSIMPQKKNPDPMELVRGKSARVIGDLTTLLVLCKGLPQAYNRDLQEDKEPLFDSVETIVAMLEVTTEFAQNITFNQKRISRSLPAGHLDATTMADYLVHKGTPFRTSHDIVGKAVALSLTKECQLSELS
A9NWV6_______________LIPSDAVSTGSSIMPQKKNPDPMELVRGKSARVIGDLTTLLVLCKGLPQAYNRDLQEDKEPLFDSVETIVAMLEVTTEFAQNVTFNQKRISRSLPAGHLDATTMADYLVHKGTPFRTSHDIVGKAVALSLSKECQLSELS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain